PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174774.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 607aa MW: 66874.4 Da PI: 7.0808

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.1	3.3e-16	279	338	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_019174774.1 279 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 338 78*****************988886678446***********************98 PP
2	AP2	46.7	8.1e-15	381	432	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_019174774.1 381 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 432 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MKSMNDHNSC GGNNNNNANN NHLLGFSLSP AMKMDAYTAA TSAPTSFYHS LSPLHSSGLC 60 YAVGEIGAFH SPLSAMPLKS DGSLCIMEAF SRSQTRSMVP NSSPKLEDFL GGATMGDGEY 120 GSHEREAGIL SLDSIYYTQQ DVEEEAARQR CLGLGFHQDP QNHHSYYSNL QIAQMPGNDE 180 LKNWASVQLF GQQAPEQQQI GTTTTALVGD GGGGNDLQPL SLSMSPGSQS SCVTAARQIS 240 PTDLECVAMD CKKRASGKLA TTKQPIHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN 300 SCKKEGQTRK GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINFPLENY QKELEEMKNM 360 TRQEHVAHLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA 420 EAYDIAAIKF RGISAVTNFD ISRYDVDKIL ASNSPAAGEL CRRNKEAAVE YNDMVGHQEN 480 NSSTTGTVSD WKMALYQAPP QQQEEQNACF ESNQQKPIFS MAVQNLIGMD SSIIPSVETH 540 FSNPSSLVSS LSNSREASPE SMAFGGAKPT LETKFLIPTT NNVRRSPMDI PLSMAHLPLF 600 AAWNDNS

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MKSMNDHNSC GGNNNNNANN NHLLGFSLSP AMKMDAYTAA TSAPTSFYHS LSPLHSSGLC  60
YAVGEIGAFH SPLSAMPLKS DGSLCIMEAF SRSQTRSMVP NSSPKLEDFL GGATMGDGEY  120
GSHEREAGIL SLDSIYYTQQ DVEEEAARQR CLGLGFHQDP QNHHSYYSNL QIAQMPGNDE  180
LKNWASVQLF GQQAPEQQQI GTTTTALVGD GGGGNDLQPL SLSMSPGSQS SCVTAARQIS  240
PTDLECVAMD CKKRASGKLA TTKQPIHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN  300
SCKKEGQTRK GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINFPLENY QKELEEMKNM  360
TRQEHVAHLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA  420
EAYDIAAIKF RGISAVTNFD ISRYDVDKIL ASNSPAAGEL CRRNKEAAVE YNDMVGHQEN  480
NSSTTGTVSD WKMALYQAPP QQQEEQNACF ESNQQKPIFS MAVQNLIGMD SSIIPSVETH  540
FSNPSSLVSS LSNSREASPE SMAFGGAKPT LETKFLIPTT NNVRRSPMDI PLSMAHLPLF  600
AAWNDNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-143	AP2 family protein