PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174735.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 371aa    MW: 40633.8 Da    PI: 7.7666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-11427226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    + e+Cr+f+r G C+yGdrCkF H+
  XP_019174735.1  4 RKEPCRNFLR-GSCHYGDRCKFLHV 27
                    789*******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MPPRKEPCRN FLRGSCHYGD RCKFLHVTQQ QPKPNVFGFG SQSGTQFQRT NFQQQQQPNP  60
FGFGVQNNSQ SRGVNDVGLK QNQQKPFENK WIRSSANASN TSARQPDNQQ GAANHVCTDP  120
ESCKRQIIED FQNEKPLWNL TCYGHRKNGP CDVIGDVSYE ELRVAAYDDA KRGLNLQSIV  180
ERERGLITPK LAEFDNLVRN SYSASANSAF GSGSQSPLFG ASQNVTSTQS PPLTSSFSQL  240
GAFLNTGLSA TPSNTLQQSN PFENFSQMPG TFGVNNVPFG NAGSLGSQFG AQSFHSPFSS  300
SSATLNNAMA GERNSSSMSL FPQLSGSIGQ SFGNTGLIKQ KEKAILDDSI WSKEWKIGEI  360
PEEAPPDEYI F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.23e-55C3H family protein