PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174670.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 312aa    MW: 34762.6 Da    PI: 9.8323
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind379.55.7e-116731225301
       GAGA_bind  25 glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqq.. 113
                      +q+m ++aerda+i+ernlalsekkaa+aerd a lqrd+a+aern+a++erdn++++l+++e s++    s +p+g+q+++g+k++++ qq  
  XP_019174670.1   7 MKQIMGIMAERDAAIQERNLALSEKKAALAERDTAILQRDTAIAERNNAIMERDNAIATLQYHESSMNtgsmSPCPPGCQISRGVKHMHHPQQhv 101
                     359**************************************************************999999899******************974 PP

       GAGA_bind 114 lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader...................... 186
                     +++p++ + a++ r++++++++p++ aa+e  + +++k+ ++ak + ++k      k++k+ kkvkke++d +                      
  XP_019174670.1 102 QHQPHMVEAAYNSRDMHMSDTMPMSPAAPEPAKPRRNKRAKEAKPATSSK------KTSKPSKKVKKEGEDLNktmfgksqewkgtqemgsgsde 190
                     4559*******************998888777666666444443332222......233333444444444222445555678899********* PP

       GAGA_bind 187 .......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                            sk ++k++dl+ln+v++Dest+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL++Laa
  XP_019174670.1 191 lsrqmcvSKPDWKDQDLGLNQVAFDESTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPTVPNKRHARIGGRKMSGSAFTKLLSRLAA 285
                     *********************************************************************************************** PP

       GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                     eG+dlsnpvDLk+hWAkHGtn+++ti+
  XP_019174670.1 286 EGHDLSNPVDLKEHWAKHGTNRYITIK 312
                     **************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MQHQPTMKQI MGIMAERDAA IQERNLALSE KKAALAERDT AILQRDTAIA ERNNAIMERD  60
NAIATLQYHE SSMNTGSMSP CPPGCQISRG VKHMHHPQQH VQHQPHMVEA AYNSRDMHMS  120
DTMPMSPAAP EPAKPRRNKR AKEAKPATSS KKTSKPSKKV KKEGEDLNKT MFGKSQEWKG  180
TQEMGSGSDE LSRQMCVSKP DWKDQDLGLN QVAFDESTMP VPVCSCTGVL RPCYKWGNGG  240
WQSSCCTTNL SMYPLPTVPN KRHARIGGRK MSGSAFTKLL SRLAAEGHDL SNPVDLKEHW  300
AKHGTNRYIT IK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-123BBR-BPC family protein