PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174666.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 331aa    MW: 37019.1 Da    PI: 9.8214
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind381.71.2e-11613311301
       GAGA_bind   1 mdddgsre.rnkg.yye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd   ++ r+k  +      ++ +++     +q+m ++aerda+i+ernlalsekkaa+aerd a lqrd+a+aern+a++erdn++++l+++e
  XP_019174666.1   1 MDDGHRENgRHKLpQ-GqwlmQHqPTM-----KQIMGIMAERDAAIQERNLALSEKKAALAERDTAILQRDTAIAERNNAIMERDNAIATLQYHE 89 
                     555544345554311.11222222444.....5************************************************************** PP

       GAGA_bind  89 nsla....salpvgvqvlsgtksidslqq..lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                      s++    s +p+g+q+++g+k++++ qq  +++p++ + a++ r++++++++p++ aa+e  + +++k+ ++ak + ++k      k++k+ kk
  XP_019174666.1  90 SSMNtgsmSPCPPGCQISRGVKHMHHPQQhvQHQPHMVEAAYNSRDMHMSDTMPMSPAAPEPAKPRRNKRAKEAKPATSSK------KTSKPSKK 178
                     *999999899******************9744559*******************998888777666666444443332222......23333344 PP

       GAGA_bind 178 vkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
                     vkke++d +                             sk ++k++dl+ln+v++Dest+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yP
  XP_019174666.1 179 VKKEGEDLNktmfgksqewkgtqemgsgsdelsrqmcvSKPDWKDQDLGLNQVAFDESTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYP 273
                     4444444222445555678899************************************************************************* PP

       GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     LP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
  XP_019174666.1 274 LPTVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 331
                     *********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MDDGHRENGR HKLPQGQWLM QHQPTMKQIM GIMAERDAAI QERNLALSEK KAALAERDTA  60
ILQRDTAIAE RNNAIMERDN AIATLQYHES SMNTGSMSPC PPGCQISRGV KHMHHPQQHV  120
QHQPHMVEAA YNSRDMHMSD TMPMSPAAPE PAKPRRNKRA KEAKPATSSK KTSKPSKKVK  180
KEGEDLNKTM FGKSQEWKGT QEMGSGSDEL SRQMCVSKPD WKDQDLGLNQ VAFDESTMPV  240
PVCSCTGVLR PCYKWGNGGW QSSCCTTNLS MYPLPTVPNK RHARIGGRKM SGSAFTKLLS  300
RLAAEGHDLS NPVDLKEHWA KHGTNRYITI K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-134BBR-BPC family protein