PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174564.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 913aa MW: 103220 Da PI: 7.8358

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.8	3e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e k+rwl+++ei+a+L n++ ++++ + + pk g++iL++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf r XP_019174564.1 30 DEaKTRWLRPNEIHAFLCNYKYFTVHVRPVNLPKGGTVILFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFVR 124 4559***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le+ivlvhy+e++ XP_019174564.1 125 RCYWLLDKTLEHIVLVHYRETQ 146 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence
MEYGVQGLLA GSDIHGFHTL EDLDVKTVMD EAKTRWLRPN EIHAFLCNYK YFTVHVRPVN 60 LPKGGTVILF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDNP 120 TFVRRCYWLL DKTLEHIVLV HYRETQEVQS SPATPSSALS DLSPPWVLTE GSESPIDCAN 180 YNRPLASLEP NDNMRIQNHR QTLHAINTLE WDELLGPDDP NKSRSTQEVV AKASVGQQQQ 240 YETNGFGLNG ANLSADELAV GSLENLPGQM SISNSINFNI PNDVVPQTLN AQMTSYSQRI 300 DFDNPSKDGL QSQDSFGKWM NYMIAADSPG SVDDPSLEPA TGYQSFPSPS LDNNSSAQEH 360 IFNITDVSPA WAFSTEETKI LVIGHFLGGQ SQLAISNLFC VCGDARVPAE VIQSGVYRCL 420 LSPQTPGLVN LYLSFDGYNP ISQVITFEFR APEIPKSTST PSVVKPHWEE LRAQMRLAHL 480 LFATPKSLNI LSSKIPQDAQ KGAKIFAHKC SHITSNWTHL TKSIDNNQLS FPQAKDQLFE 540 LSLHTKLQEW LLERILEGCK IPERDEQGQS VIHLCAILGY TWAIYPYKWS GLSLDYRDKF 600 GWTALHWAAY YGREKMVAVL LSAGAKPSMV TDPTTGNPSG CTAADLASKN GYEGLGAYLA 660 EKALVAQFNE MTLAGNASGS LQPASDSGNY GNTAEDMELK DTLAAYRTAA DAAARIQSAF 720 REHSFKLRKM QVESSTPESE ARSIIAAMKI QHAFRKYDTR KKIDAAARIQ YRFRTWKIRK 780 DFLNMRRQAT KIQSIFRGYQ VRRQYRKIVW SVGVLEKAIL RWRLKRKGFR GLQVAETTDT 840 TENQKQDNDV VDEDFFRASR KQAEERVERA VVRVQAMFRS KKAQEEYRRM KLEHNTASLQ 900 YEEFLDPTDT YMG

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence

MEYGVQGLLA GSDIHGFHTL EDLDVKTVMD EAKTRWLRPN EIHAFLCNYK YFTVHVRPVN  60
LPKGGTVILF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETQEVQS SPATPSSALS DLSPPWVLTE GSESPIDCAN  180
YNRPLASLEP NDNMRIQNHR QTLHAINTLE WDELLGPDDP NKSRSTQEVV AKASVGQQQQ  240
YETNGFGLNG ANLSADELAV GSLENLPGQM SISNSINFNI PNDVVPQTLN AQMTSYSQRI  300
DFDNPSKDGL QSQDSFGKWM NYMIAADSPG SVDDPSLEPA TGYQSFPSPS LDNNSSAQEH  360
IFNITDVSPA WAFSTEETKI LVIGHFLGGQ SQLAISNLFC VCGDARVPAE VIQSGVYRCL  420
LSPQTPGLVN LYLSFDGYNP ISQVITFEFR APEIPKSTST PSVVKPHWEE LRAQMRLAHL  480
LFATPKSLNI LSSKIPQDAQ KGAKIFAHKC SHITSNWTHL TKSIDNNQLS FPQAKDQLFE  540
LSLHTKLQEW LLERILEGCK IPERDEQGQS VIHLCAILGY TWAIYPYKWS GLSLDYRDKF  600
GWTALHWAAY YGREKMVAVL LSAGAKPSMV TDPTTGNPSG CTAADLASKN GYEGLGAYLA  660
EKALVAQFNE MTLAGNASGS LQPASDSGNY GNTAEDMELK DTLAAYRTAA DAAARIQSAF  720
REHSFKLRKM QVESSTPESE ARSIIAAMKI QHAFRKYDTR KKIDAAARIQ YRFRTWKIRK  780
DFLNMRRQAT KIQSIFRGYQ VRRQYRKIVW SVGVLEKAIL RWRLKRKGFR GLQVAETTDT  840
TENQKQDNDV VDEDFFRASR KQAEERVERA VVRVQAMFRS KKAQEEYRRM KLEHNTASLQ  900
YEEFLDPTDT YMG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	88	RKKLRNFRKDGHNWKKK
2	72	89	RKKLRNFRKDGHNWKKKK
3	73	89	RKKLRNFRKDGHNWKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein