PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174405.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 532aa MW: 59267.5 Da PI: 8.1595

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.4	1.3e-18	16	99	10	99
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +s l +p kfa++++g++ s + +l +sg++W v + ++ +g+ ++ +GW Fvk++ L+ gD++vF++dg+ +f +v+vf++ XP_019174405.1 16 SISSEKLKIPSKFAKHMDGVT--SGMASLVGPSGNTWYVGV--SQLDGGLFFHDGWTVFVKDHCLEYGDSLVFRYDGDLDF--HVQVFDE 99 456677******8889995..459***********..9****************************98888..*9985 PP
2	B3	58.7	1.1e-18	244	339	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f kv+++ +v+ s l +p +fa+eh ++++++++l++++g+sW v+ i ++ + ++++ +GW Fv++n+L+ gD+++F+l++ ++el+v XP_019174405.1 244 FTKVMKRFNVSGSFTLNVPYQFATEHL--PKCKVKIMLRNLKGQSWVVNSIPtTRVQTSHTFCGGWLAFVRDNNLDLGDICIFELVH--KGELRV 334 88999999****************6..34999************77566666699*********************987..777899 PP EEE-S CS B3 95 kvfrk 99 +++r XP_019174405.1 335 RILRV 339 99985 PP
3	B3	49.7	6.6e-16	434	518	10	97
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + s l +p +f eh +++ ++++l++++g+sW+v+ + + ++ +++ +GW Fv++n+++ gD+++F+l+g+ e ++v+++ XP_019174405.1 434 ISGSYTLKVPYQFSMEHL--PNCRTQIILRNLKGQSWTVNSVPTTRVQTlHTFCGGWMAFVRDNDIQMGDICIFELVGKCE--MRVHIC 518 455667999**99996..458889***********6655555579999********************99544..577776 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MSNGRKPHFL HGFNPSISSE KLKIPSKFAK HMDGVTSGMA SLVGPSGNTW YVGVSQLDGG 60 LFFHDGWTVF VKDHCLEYGD SLVFRYDGDL DFHVQVFDEG SCEKEAAFCA DCSQDVTNFE 120 NHAIKKRDRK SLGLLDCIAE GVPKRMRSTE IHSECPTSGQ ENPVTSSKED YVCGGELVCL 180 REMEIDGNPL KDFVTIAVPS QGKCVYENSV DATISSWTND EDVWLSTQEA ERAARSFTSS 240 FPNFTKVMKR FNVSGSFTLN VPYQFATEHL PKCKVKIMLR NLKGQSWVVN SIPTTRVQTS 300 HTFCGGWLAF VRDNNLDLGD ICIFELVHKG ELRVRILRVE KEGVNDHSSV TAHKPVANVK 360 GKHRSTLKSS FLHTQLNATG GQSVTRKCTS SQDKLGSSTK GCMSLKSAPE EKIAAQAFIS 420 SFPHFVRVMK KFNISGSYTL KVPYQFSMEH LPNCRTQIIL RNLKGQSWTV NSVPTTRVQT 480 LHTFCGGWMA FVRDNDIQMG DICIFELVGK CEMRVHICAI GKKGLDYQNG SI

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MSNGRKPHFL HGFNPSISSE KLKIPSKFAK HMDGVTSGMA SLVGPSGNTW YVGVSQLDGG  60
LFFHDGWTVF VKDHCLEYGD SLVFRYDGDL DFHVQVFDEG SCEKEAAFCA DCSQDVTNFE  120
NHAIKKRDRK SLGLLDCIAE GVPKRMRSTE IHSECPTSGQ ENPVTSSKED YVCGGELVCL  180
REMEIDGNPL KDFVTIAVPS QGKCVYENSV DATISSWTND EDVWLSTQEA ERAARSFTSS  240
FPNFTKVMKR FNVSGSFTLN VPYQFATEHL PKCKVKIMLR NLKGQSWVVN SIPTTRVQTS  300
HTFCGGWLAF VRDNNLDLGD ICIFELVHKG ELRVRILRVE KEGVNDHSSV TAHKPVANVK  360
GKHRSTLKSS FLHTQLNATG GQSVTRKCTS SQDKLGSSTK GCMSLKSAPE EKIAAQAFIS  420
SFPHFVRVMK KFNISGSYTL KVPYQFSMEH LPNCRTQIIL RNLKGQSWTV NSVPTTRVQT  480
LHTFCGGWMA FVRDNDIQMG DICIFELVGK CEMRVHICAI GKKGLDYQNG SI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-19	B3 family protein