PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019174399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 434aa MW: 46953.2 Da PI: 8.1352 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3.2e-06 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cgk F r nL+ H r H XP_019174399.1 56 YVCDVCGKGFQREQNLQLHRRGH 78 9********************88 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ + + k H++t+ XP_019174399.1 133 FKCEKCNKMYAVQCDWKAHMKTC 155 89*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence |
MEDPRQMTTV LPGEESAQLS EQTVKPKRKR STPGMPDAEV EVIALSPKSL LETNRYVCDV 60 CGKGFQREQN LQLHRRGHNL PWKLKQRGPE EVVKRRVYVC PETTCSRHHP SKALGDLSGI 120 KKHFCRKHGH RTFKCEKCNK MYAVQCDWKA HMKTCGTRDY ICDCGALFAR KDSFIAHKRV 180 CYASQALTVT APSASPPPQP PTPSMAVLSP TLSLHSIQSF ELPEDRVMGG ANYKERTQAP 240 SSSFGLVIGD NGEEDFSSVF RLSLRSGNEE EATPACAAIM ERPVPLLLST PPPVYHASNP 300 PVLSATALLQ KAAEMGSSFS SGGSFFAGYG LTMPATPAQW GMHANAPELA LELALRPASA 360 AATAFAGSVF SSHRQTLDFL GSNLPTLDFL GEANQSSSSS LLSSTSYATQ FGMASSSSFG 420 GALGDPWDGH ADKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 3e-87 | C2H2 family protein |