PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174397.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 434aa MW: 46953.2 Da PI: 8.1352

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3.2e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cgk F r nL+ H r H XP_019174397.1 56 YVCDVCGKGFQREQNLQLHRRGH 78 9********************88 PP
2	zf-C2H2	14	0.00015	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ + + k H++t+ XP_019174397.1 133 FKCEKCNKMYAVQCDWKAHMKTC 155 89*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MEDPRQMTTV LPGEESAQLS EQTVKPKRKR STPGMPDAEV EVIALSPKSL LETNRYVCDV 60 CGKGFQREQN LQLHRRGHNL PWKLKQRGPE EVVKRRVYVC PETTCSRHHP SKALGDLSGI 120 KKHFCRKHGH RTFKCEKCNK MYAVQCDWKA HMKTCGTRDY ICDCGALFAR KDSFIAHKRV 180 CYASQALTVT APSASPPPQP PTPSMAVLSP TLSLHSIQSF ELPEDRVMGG ANYKERTQAP 240 SSSFGLVIGD NGEEDFSSVF RLSLRSGNEE EATPACAAIM ERPVPLLLST PPPVYHASNP 300 PVLSATALLQ KAAEMGSSFS SGGSFFAGYG LTMPATPAQW GMHANAPELA LELALRPASA 360 AATAFAGSVF SSHRQTLDFL GSNLPTLDFL GEANQSSSSS LLSSTSYATQ FGMASSSSFG 420 GALGDPWDGH ADKN

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MEDPRQMTTV LPGEESAQLS EQTVKPKRKR STPGMPDAEV EVIALSPKSL LETNRYVCDV  60
CGKGFQREQN LQLHRRGHNL PWKLKQRGPE EVVKRRVYVC PETTCSRHHP SKALGDLSGI  120
KKHFCRKHGH RTFKCEKCNK MYAVQCDWKA HMKTCGTRDY ICDCGALFAR KDSFIAHKRV  180
CYASQALTVT APSASPPPQP PTPSMAVLSP TLSLHSIQSF ELPEDRVMGG ANYKERTQAP  240
SSSFGLVIGD NGEEDFSSVF RLSLRSGNEE EATPACAAIM ERPVPLLLST PPPVYHASNP  300
PVLSATALLQ KAAEMGSSFS SGGSFFAGYG LTMPATPAQW GMHANAPELA LELALRPASA  360
AATAFAGSVF SSHRQTLDFL GSNLPTLDFL GEANQSSSSS LLSSTSYATQ FGMASSSSFG  420
GALGDPWDGH ADKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	3e-87	C2H2 family protein