PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174345.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 795aa    MW: 88862.5 Da    PI: 9.3104
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07192212526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      Cr+fa  G C+ G+ C+F H+
  XP_019174345.1 192 TCRDFAT-GKCRKGSECRFLHP 212
                     5******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    
MGETVRKRKS LWDAEEDTSL HVEPNDKNAW SGKGQYPSYQ ENSASKTDFL SPQNVPQESH  60
RSSQHGERVP ETEEADGKKD LYRSMSPSFD GRGKQRGCRS PDHRSSQSRR HPARDRSRSR  120
GRGEGRSRSP SRRRDRARYQ VQKRSGSRSR SRSRDRGNMK ARSRSRSPSH NYKSDPHGWG  180
DRRNGSRISS QTCRDFATGK CRKGSECRFL HPDNLKSTDG FQLEDELAET LGNRLEHGHV  240
SRCANSEGHE IRDELPDAYD IEHDQTRKRN RVMITCKDFI KGKCHWGASC KFLHAGVSGD  300
NYERGVKNAS LNYVQEREST KSTKPLCKYF AAGKCFHENC KFSHDGPTPS YIETRPSDNI  360
GGCRLDGKNK HPSGPNWDDA QRDSNLSQIG IHPKRFMASP NGRDANTSGS VLEKLTDSEE  420
QTDGSSHVYE QGKTQEASGV NLSNTVMKPE MSSNSFVMPY TSEDKGKFGP NALHEVKNSR  480
NSVHPVLLPG QSYQVGENMI VSSEPSFFTS SNQSRPRNQK EAASSTDTPS MEFPHNLSTA  540
ALVKLASQMK NSSTSSMFKF ENESAKSELH SEVVPSDPSS ALPMFSAKPN PDRYHAPGDS  600
VELCTSGNFM MPLVNAPRLD EQKTKVPLEK LNLSAVNPGA GEKNEVGGSG VMCNKDPLLK  660
QREICTDLEV NGNNKIVANK CDDGQENKHS DNVEVHGKAE EVGGNKDDKA IRLFKNALIE  720
FVKEILKPTW KEGRMSREVH KTIVKKVVDK VTSTIQGEHI PKTQEKIEQY LSYSKPKLSK  780
LVQAYVERCL KAPDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RDRSRSRGR
2148156RDRSRSRGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-12C3H family protein