PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019174345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 795aa MW: 88862.5 Da PI: 9.3104 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 192 | 212 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+fa G C+ G+ C+F H+ XP_019174345.1 192 TCRDFAT-GKCRKGSECRFLHP 212 5******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 795 aa Download sequence |
MGETVRKRKS LWDAEEDTSL HVEPNDKNAW SGKGQYPSYQ ENSASKTDFL SPQNVPQESH 60 RSSQHGERVP ETEEADGKKD LYRSMSPSFD GRGKQRGCRS PDHRSSQSRR HPARDRSRSR 120 GRGEGRSRSP SRRRDRARYQ VQKRSGSRSR SRSRDRGNMK ARSRSRSPSH NYKSDPHGWG 180 DRRNGSRISS QTCRDFATGK CRKGSECRFL HPDNLKSTDG FQLEDELAET LGNRLEHGHV 240 SRCANSEGHE IRDELPDAYD IEHDQTRKRN RVMITCKDFI KGKCHWGASC KFLHAGVSGD 300 NYERGVKNAS LNYVQEREST KSTKPLCKYF AAGKCFHENC KFSHDGPTPS YIETRPSDNI 360 GGCRLDGKNK HPSGPNWDDA QRDSNLSQIG IHPKRFMASP NGRDANTSGS VLEKLTDSEE 420 QTDGSSHVYE QGKTQEASGV NLSNTVMKPE MSSNSFVMPY TSEDKGKFGP NALHEVKNSR 480 NSVHPVLLPG QSYQVGENMI VSSEPSFFTS SNQSRPRNQK EAASSTDTPS MEFPHNLSTA 540 ALVKLASQMK NSSTSSMFKF ENESAKSELH SEVVPSDPSS ALPMFSAKPN PDRYHAPGDS 600 VELCTSGNFM MPLVNAPRLD EQKTKVPLEK LNLSAVNPGA GEKNEVGGSG VMCNKDPLLK 660 QREICTDLEV NGNNKIVANK CDDGQENKHS DNVEVHGKAE EVGGNKDDKA IRLFKNALIE 720 FVKEILKPTW KEGRMSREVH KTIVKKVVDK VTSTIQGEHI PKTQEKIEQY LSYSKPKLSK 780 LVQAYVERCL KAPDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 122 | RDRSRSRGR |
2 | 148 | 156 | RDRSRSRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-12 | C3H family protein |