PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019174311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22266.3 Da PI: 7.9282 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90 | 2.9e-28 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlrr+C +C+l+ ++ +++q++++ +v k+FG+s ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++ XP_019174311.1 2 SCNGCRVLRRGCGVNCILRSCLeeidnAQAQANATLFVSKFFGRSDLMSFISSVPNTRRPALFKSLLYEACGRTVNPVSGAVGLLSTGNWHVCVQ 96 6*********************8888777889**************************************************************9 PP DUF260 91 kaelallk 98 ++e++l++ XP_019174311.1 97 AVETVLAG 104 99988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MSCNGCRVLR RGCGVNCILR SCLEEIDNAQ AQANATLFVS KFFGRSDLMS FISSVPNTRR 60 PALFKSLLYE ACGRTVNPVS GAVGLLSTGN WHVCVQAVET VLAGGALQPI ATEFLSPPSF 120 DDASRIFHEG AWKIPEVSVV TQSQPSDPLN HQMPAGNKKK KRVSSAAFGS ETETETSSEV 180 YGCYESGCRS VRDAVGGKEP KLLNLFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-57 | LBD family protein |