PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174107.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 264aa    MW: 29063.3 Da    PI: 6.9648
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174107.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17166203136
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                     C++C+t++  Tp++Rrgp g++tLCnaCGl+++ kg++
  XP_019174107.1 166 CTHCNTSSkaTPMMRRGPAGPRTLCNACGLFWANKGTM 203
                     ***********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MQPTSAPGHF PGGGDCAAGK EEHTNNAGIG YEVQCIEGGA IGGFDGVEVP VPYGSVFTAA  60
DAAYAPDQLT LSFRGQVYVF DAVTLEKENT DYSARCSDPK RAESLNRFRQ KRKERCYGRK  120
IRYNIRHEVA VRMQRRKGQF ASKNTIAGNA QMESGQDDNS HQEIWCTHCN TSSKATPMMR  180
RGPAGPRTLC NACGLFWANK GTMRVLPKRR CSNTLTEMED EDEDDSDSDY GMPLPLRYNI  240
DYMASSSAGD SSAVLSPERG CQRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.26e-57GATA family protein