PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173953.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 442aa MW: 48689.9 Da PI: 5.4316

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.4	1e-07	391	424	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_019173953.1 391 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 424 569*****************************87 PP
2	ELK	28.7	2.9e-10	345	366	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_019173953.1 345 ELKHELKQGYKEKIVDIREEIL 366 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MAYQNQLSQE MASLQHFSEQ QLGENSSVLR TILPQQLGGQ SSPTGKPAES HQQAPPPTWL 60 NSAILRQQSQ YVGDGSGGSG EGNFLNSHSN SESSAAAAAS NQWLSRSILQ RNVRDDVPVS 120 RDSMIAAAIM HESAADLNAN DDDDVKNIGN NDNHGGAAGG ELGESEVVGG TGIVNWQNAR 180 YKAEILAHPL YEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQQVIAKYSA LGHGNLGDDR 240 ELDQFLTHYV LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD 300 DDDDQVDSDA NLFDGGGLDG TDSLGFGPLI PTENERSLME RVRQELKHEL KQGYKEKIVD 360 IREEILRKRR AGKLPGDTTS VLKAWWQSHA KWPYPTEEDK ARLVQETGLQ LKQINNWFIN 420 QRKRNWHSNP SSSTTLKSKR KR

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MAYQNQLSQE MASLQHFSEQ QLGENSSVLR TILPQQLGGQ SSPTGKPAES HQQAPPPTWL  60
NSAILRQQSQ YVGDGSGGSG EGNFLNSHSN SESSAAAAAS NQWLSRSILQ RNVRDDVPVS  120
RDSMIAAAIM HESAADLNAN DDDDVKNIGN NDNHGGAAGG ELGESEVVGG TGIVNWQNAR  180
YKAEILAHPL YEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQQVIAKYSA LGHGNLGDDR  240
ELDQFLTHYV LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD  300
DDDDQVDSDA NLFDGGGLDG TDSLGFGPLI PTENERSLME RVRQELKHEL KQGYKEKIVD  360
IREEILRKRR AGKLPGDTTS VLKAWWQSHA KWPYPTEEDK ARLVQETGLQ LKQINNWFIN  420
QRKRNWHSNP SSSTTLKSKR KR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	422	442	RKRNWHSNPSSSTTLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-158	TALE family protein