PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173765.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 497aa MW: 55284.3 Da PI: 6.1059

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.5	2.5e-27	125	178	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+ L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYR+ XP_019173765.1 125 KPRVVWSVELHQKFVAAVNYL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRI 178 79*****************.******************************6 PP
2	Myb_DNA-binding	35.5	2.3e-11	127	177	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+ lG + +k+I + m+ +++t++++ s++qky+ XP_019173765.1 127 RVVWSVELHQKFVAAVNYLGIDkaVPKRILELMNvEKLTRENVASHLQKYR 177 678******************************99***********7 PP
3	Response_reg	34	1.5e-12	1	56	53	109
CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 mp+mdG++ll+ e++lp+i+++a+g+ +++ + + Ga d+l Kp+ +eel + XP_019173765.1 1 MPDMDGFKLLELVGL-EMDLPVIMLSAYGDTNLVMKGITHGACDYLLKPVRIEELKN 56 9*******87754.558*********************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MPDMDGFKLL ELVGLEMDLP VIMLSAYGDT NLVMKGITHG ACDYLLKPVR IEELKNIWQH 60 VLRRKKFEQK ISNKPDGELG RGFRGMGKTD RNGKPTRKRK DQSDDEDEEL DENSGRSEDP 120 SAQKKPRVVW SVELHQKFVA AVNYLGIDKA VPKRILELMN VEKLTRENVA SHLQKYRIFL 180 KRLDSVASQH ANMVSVLGSA DPSYLRMGSL NNIGNIPFNP LRSISSGSVL TRLNSPSGLG 240 MCGFAPSSMI QLANAPNSSS SITSEINFQQ SIQPGNRDMD ILEGMPLPLG TDNLGVTHLY 300 PFSNGTRMPE RKIDGDGRRN LNIGVSDNSI ILRSRGQCVQ RKDFLDNHFP VIASPMNTER 360 CNDNWPTATQ SSLLEANSFG TGVYSHHAMP GDLGNNAMSS NLHNPLNSVC PQVPDTRTEM 420 QCLTTIIDNV SGVKMNFSPR QDWDDFEPDS AHVPSLVCSS SANTFLPPDG GQRQQQQQHD 480 EFENAAVDMK QEYLEEQ

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MPDMDGFKLL ELVGLEMDLP VIMLSAYGDT NLVMKGITHG ACDYLLKPVR IEELKNIWQH  60
VLRRKKFEQK ISNKPDGELG RGFRGMGKTD RNGKPTRKRK DQSDDEDEEL DENSGRSEDP  120
SAQKKPRVVW SVELHQKFVA AVNYLGIDKA VPKRILELMN VEKLTRENVA SHLQKYRIFL  180
KRLDSVASQH ANMVSVLGSA DPSYLRMGSL NNIGNIPFNP LRSISSGSVL TRLNSPSGLG  240
MCGFAPSSMI QLANAPNSSS SITSEINFQQ SIQPGNRDMD ILEGMPLPLG TDNLGVTHLY  300
PFSNGTRMPE RKIDGDGRRN LNIGVSDNSI ILRSRGQCVQ RKDFLDNHFP VIASPMNTER  360
CNDNWPTATQ SSLLEANSFG TGVYSHHAMP GDLGNNAMSS NLHNPLNSVC PQVPDTRTEM  420
QCLTTIIDNV SGVKMNFSPR QDWDDFEPDS AHVPSLVCSS SANTFLPPDG GQRQQQQQHD  480
EFENAAVDMK QEYLEEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	2e-82	ARR-B family protein