PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173763.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 569aa MW: 63600.8 Da PI: 5.5149

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.3	3e-27	197	250	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+ L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYR+ XP_019173763.1 197 KPRVVWSVELHQKFVAAVNYL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRI 250 79*****************.******************************6 PP
2	Myb_DNA-binding	35.2	2.8e-11	199	249	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+ lG + +k+I + m+ +++t++++ s++qky+ XP_019173763.1 199 RVVWSVELHQKFVAAVNYLGIDkaVPKRILELMNvEKLTRENVASHLQKYR 249 678******************************99***********7 PP
3	Response_reg	79.3	1.3e-26	20	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ +++l+++l+k +y +v+++ ++ alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++a+g+ +++ + + G XP_019173763.1 20 VLAVDDNPTCLMVLENLLRKCQY-HVTATNQAIRALELLRENKneFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAYGDTNLVMKGITHG 112 799******************.***********888889***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_019173763.1 113 ACDYLLKPVRIEELKN 128 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MTVEQRNDKQ NDEFPVGMRV LAVDDNPTCL MVLENLLRKC QYHVTATNQA IRALELLREN 60 KNEFDLVISD VDMPDMDGFK LLELVGLEMD LPVIMLSAYG DTNLVMKGIT HGACDYLLKP 120 VRIEELKNIW QHVLRRKKFE QKISNKPDGE LGRGFRGMGK TDRNGKPTRK RKDQSDDEDE 180 ELDENSGRSE DPSAQKKPRV VWSVELHQKF VAAVNYLGID KAVPKRILEL MNVEKLTREN 240 VASHLQKYRI FLKRLDSVAS QHANMVSVLG SADPSYLRMG SLNNIGNIPF NPLRSISSGS 300 VLTRLNSPSG LGMCGFAPSS MIQLANAPNS SSSITSEINF QQSIQPGNRD MDILEGMPLP 360 LGTDNLGVTH LYPFSNGTRM PERKIDGDGR RNLNIGVSDN SIILRSRGQC VQRKDFLDNH 420 FPVIASPMNT ERCNDNWPTA TQSSLLEANS FGTGVYSHHA MPGDLGNNAM SSNLHNPLNS 480 VCPQVPDTRT EMQCLTTIID NVSGVKMNFS PRQDWDDFEP DSAHVPSLVC SSSANTFLPP 540 DGGQRQQQQQ HDEFENAAVD MKQEYLEEQ

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MTVEQRNDKQ NDEFPVGMRV LAVDDNPTCL MVLENLLRKC QYHVTATNQA IRALELLREN  60
KNEFDLVISD VDMPDMDGFK LLELVGLEMD LPVIMLSAYG DTNLVMKGIT HGACDYLLKP  120
VRIEELKNIW QHVLRRKKFE QKISNKPDGE LGRGFRGMGK TDRNGKPTRK RKDQSDDEDE  180
ELDENSGRSE DPSAQKKPRV VWSVELHQKF VAAVNYLGID KAVPKRILEL MNVEKLTREN  240
VASHLQKYRI FLKRLDSVAS QHANMVSVLG SADPSYLRMG SLNNIGNIPF NPLRSISSGS  300
VLTRLNSPSG LGMCGFAPSS MIQLANAPNS SSSITSEINF QQSIQPGNRD MDILEGMPLP  360
LGTDNLGVTH LYPFSNGTRM PERKIDGDGR RNLNIGVSDN SIILRSRGQC VQRKDFLDNH  420
FPVIASPMNT ERCNDNWPTA TQSSLLEANS FGTGVYSHHA MPGDLGNNAM SSNLHNPLNS  480
VCPQVPDTRT EMQCLTTIID NVSGVKMNFS PRQDWDDFEP DSAHVPSLVC SSSANTFLPP  540
DGGQRQQQQQ HDEFENAAVD MKQEYLEEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-123	ARR-B family protein