PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173422.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 754aa MW: 83665.4 Da PI: 4.3547

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.6e-06	711	731	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ XP_019173422.1 711 YCRHYQK-GRCHEGEKCKFSHD 731 6****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MENCSELDRT KPSQNAFHFP PPHRRRTLMS ETYRTLIHIL SHCPTSSELQ SSQEKQEETG 60 CSESGKEITA HGALVDQHME AEIKLVNDID HEKNRTHDIS QEMGDISEGQ IKYCIDLLDH 120 IDDAVEVNGE VPQKNGANNG ISSSLVDNNQ ASTLVLQSYN EQEDKSNTPE LQLGESDLVK 180 LQNMDKDISV HETCATMESC FMDEDNELTQ LVQSREEKSH IAENKFFEDM EHGLQLNEME 240 LQNLVDNNQA STLDHIDDAM DVNGEVPQKN GTDNGSGSLV DNNQASTLVL QLYDEQEDKS 300 NTPELQVGES DITKLQHMDK EISIREACAT IESCFMDEDN ELSQVVQGGQ EEGHVAENNL 360 LEDMEHELQL RDMELQNLVD NNQASILDPN DDAMEVNGGV PQKNGANNGI SNALVDNNQA 420 GTLVLQVYNE QEDKSNDPES CFMDEDNELT LLALSSEEKS HVAEKNLLKG MEHGSQLKEM 480 ELQNLISASG AANSSVPETV VEEIEEGEIS GDAGVSDESD GDMFEDTVSL EQGHTHVSIT 540 AEKEFILDVL DTKLQEKHVL TSFSNDSADG CSNISKELLG KKSEVEESDF EMVVYQKDVE 600 TEKIDGFDNV IDSEIVNGQV DGVGKVDSSA ACLALKTVSL ENATKSKGSV TDAELEVVNE 660 GKRKKKRGPI TKEKRAKKKC KERIKRAQKN IKLGVKRLKL PPTVKPKTVS YCRHYQKGRC 720 HEGEKCKFSH DIIPLTKSKP CCHFARHSCM KGAS

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MENCSELDRT KPSQNAFHFP PPHRRRTLMS ETYRTLIHIL SHCPTSSELQ SSQEKQEETG  60
CSESGKEITA HGALVDQHME AEIKLVNDID HEKNRTHDIS QEMGDISEGQ IKYCIDLLDH  120
IDDAVEVNGE VPQKNGANNG ISSSLVDNNQ ASTLVLQSYN EQEDKSNTPE LQLGESDLVK  180
LQNMDKDISV HETCATMESC FMDEDNELTQ LVQSREEKSH IAENKFFEDM EHGLQLNEME  240
LQNLVDNNQA STLDHIDDAM DVNGEVPQKN GTDNGSGSLV DNNQASTLVL QLYDEQEDKS  300
NTPELQVGES DITKLQHMDK EISIREACAT IESCFMDEDN ELSQVVQGGQ EEGHVAENNL  360
LEDMEHELQL RDMELQNLVD NNQASILDPN DDAMEVNGGV PQKNGANNGI SNALVDNNQA  420
GTLVLQVYNE QEDKSNDPES CFMDEDNELT LLALSSEEKS HVAEKNLLKG MEHGSQLKEM  480
ELQNLISASG AANSSVPETV VEEIEEGEIS GDAGVSDESD GDMFEDTVSL EQGHTHVSIT  540
AEKEFILDVL DTKLQEKHVL TSFSNDSADG CSNISKELLG KKSEVEESDF EMVVYQKDVE  600
TEKIDGFDNV IDSEIVNGQV DGVGKVDSSA ACLALKTVSL ENATKSKGSV TDAELEVVNE  660
GKRKKKRGPI TKEKRAKKKC KERIKRAQKN IKLGVKRLKL PPTVKPKTVS YCRHYQKGRC  720
HEGEKCKFSH DIIPLTKSKP CCHFARHSCM KGAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	662	681	KRKKKRGPITKEKRAKKKCK
2	674	682	KRAKKKCKE