PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019173421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 1110aa MW: 121683 Da PI: 4.8134 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.9e-06 | 711 | 731 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ XP_019173421.1 711 YCRHYQK-GRCHEGEKCKFSHD 731 6******.*************6 PP | |||||||
2 | zf-CCCH | 17.9 | 5.5e-06 | 765 | 785 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f +G+C++G C F+H XP_019173421.1 765 PCNNFVSNGFCSRGVDCLFSH 785 7******************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1110 aa Download sequence |
MENCSELDRT KPSQNAFHFP PPHRRRTLMS ETYRTLIHIL SHCPTSSELQ SSQEKQEETG 60 CSESGKEITA HGALVDQHME AEIKLVNDID HEKNRTHDIS QEMGDISEGQ IKYCIDLLDH 120 IDDAVEVNGE VPQKNGANNG ISSSLVDNNQ ASTLVLQSYN EQEDKSNTPE LQLGESDLVK 180 LQNMDKDISV HETCATMESC FMDEDNELTQ LVQSREEKSH IAENKFFEDM EHGLQLNEME 240 LQNLVDNNQA STLDHIDDAM DVNGEVPQKN GTDNGSGSLV DNNQASTLVL QLYDEQEDKS 300 NTPELQVGES DITKLQHMDK EISIREACAT IESCFMDEDN ELSQVVQGGQ EEGHVAENNL 360 LEDMEHELQL RDMELQNLVD NNQASILDPN DDAMEVNGGV PQKNGANNGI SNALVDNNQA 420 GTLVLQVYNE QEDKSNDPES CFMDEDNELT LLALSSEEKS HVAEKNLLKG MEHGSQLKEM 480 ELQNLISASG AANSSVPETV VEEIEEGEIS GDAGVSDESD GDMFEDTVSL EQGHTHVSIT 540 AEKEFILDVL DTKLQEKHVL TSFSNDSADG CSNISKELLG KKSEVEESDF EMVVYQKDVE 600 TEKIDGFDNV IDSEIVNGQV DGVGKVDSSA ACLALKTVSL ENATKSKGSV TDAELEVVNE 660 GKRKKKRGPI TKEKRAKKKC KERIKRAQKN IKLGVKRLKL PPTVKPKTVS YCRHYQKGRC 720 HEGEKCKFSH DIIPLTKSKP CCHFARHSCM KGDDCPFDHQ LSKYPCNNFV SNGFCSRGVD 780 CLFSHKVPAK TESSAPPIIS KAELSSPLLP NSLSPKMQVN AHGSSQLFPG KNTGHTVGDT 840 VQKLAVRAPK GVSFLSHGKL PVGDTNHKEF GSSLKEGDSG KFNHEEIHSK SDNTQKPNDV 900 IKGPTSRIPH GINFLSLARA PLTDSSSKTI PSFLNRDYRI GKFQLDEFSK GKDTASSPRS 960 GGSCRNEMTT RTPPKSMPRG ISLLSFGKVS LDVTCSTEQA IICNKEYKTA SPVVQGIQGS 1020 LNRLGGSGEM QFKFSSSSFP SNQLMGQSAV GHSEGMPNSS KTTFLANIPS SAQKALQSTL 1080 AFAAKFESGI KLDQSIGGAS VASSNIKEHR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 662 | 681 | KRKKKRGPITKEKRAKKKCK |
2 | 674 | 682 | KRAKKKCKE |