PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173271.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 297aa    MW: 32525.2 Da    PI: 7.71
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
   XP_019173271.1  5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPDfapvlRARSNVDLKDKWRNL 56
                     79***********************************9************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPDFAPV LRARSNVDLK DKWRNLHVMA  60
NGWGSRQRGK IASKSTQPIS KRDDDSMALT TLADNDMEVP DAKPLATVSE TLPDVGSKKP  120
ITSLGDLIME AIAKLKEPRG SSRNAISMYI EEHYKAPTNL ERLIVANLKD LTERRRLIKV  180
KHYYRIAPSG MSLSIDVKGD PSLLLLEGKQ THPPMPEKNG IRILTKAQID AELEKMRNMN  240
AQDAAAAAAQ AVAEAEAAIA EAEWAAREAE EAEAEAEAAR CFAEAATKAL NYQTIHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.15e-68MYB_related family protein