PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019173228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24399.2 Da PI: 8.4749 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.4 | 5e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCd+++ +i+fs tgkl ys+ XP_019173228.1 9 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDVDIGLIVFSATGKLCHYSN 59 68*********************************************9985 PP | |||||||
2 | K-box | 53.6 | 9.6e-19 | 88 | 171 | 15 | 98 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +a L ke + re+R+l GedL++L + eL +Le+ +e +l++i kK ++ll++i+ l+kke +l een +L+++ XP_019173228.1 88 QRESITYAGLAKEFTEKSRELRQLNGEDLQELGMAELIKLEKMVEGGLSRIMRKKGDILLSEINALKKKEAKLMEENAQLKQRS 171 5556667788888888899*************************************************************9975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence |
MVRTKIEIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD VDIGLIVFSA TGKLCHYSNS 60 NMEEVITRHS MHIEKVECVE HQPSPSLQRE SITYAGLAKE FTEKSRELRQ LNGEDLQELG 120 MAELIKLEKM VEGGLSRIMR KKGDILLSEI NALKKKEAKL MEENAQLKQR SEIGVQGGPP 180 YSSESVTNGC CLFPDKLQDH YKSSDTSLKL GLPFPD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24540.1 | 1e-55 | MIKC_MADS family protein |