PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173225.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24399.2 Da    PI: 8.4749
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.45e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKA+ELS+LCd+++ +i+fs tgkl  ys+
  XP_019173225.1  9 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDVDIGLIVFSATGKLCHYSN 59
                    68*********************************************9985 PP
2K-box53.69.6e-19881711598
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++ +  +a L ke  +  re+R+l GedL++L + eL +Le+ +e +l++i  kK ++ll++i+ l+kke +l een +L+++ 
  XP_019173225.1  88 QRESITYAGLAKEFTEKSRELRQLNGEDLQELGMAELIKLEKMVEGGLSRIMRKKGDILLSEINALKKKEAKLMEENAQLKQRS 171
                     5556667788888888899*************************************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MVRTKIEIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD VDIGLIVFSA TGKLCHYSNS  60
NMEEVITRHS MHIEKVECVE HQPSPSLQRE SITYAGLAKE FTEKSRELRQ LNGEDLQELG  120
MAELIKLEKM VEGGLSRIMR KKGDILLSEI NALKKKEAKL MEENAQLKQR SEIGVQGGPP  180
YSSESVTNGC CLFPDKLQDH YKSSDTSLKL GLPFPD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-55MIKC_MADS family protein