PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173211.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 735aa MW: 82003.3 Da PI: 6.4172

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.4	1.8e-09	672	726	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r +WT+eE+e l+++v++ + Wk I + g kgRt+ ++k++w++ XP_019173211.1 672 RVPWTKEEEEALKEGVAKCKSIgqkniAWKEILEFGGdrfwKGRTAMDLKDKWRN 726 789**************98899****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MEDLVKRIPK ISDDLGRSAR EMVSFRILEN LLIKNNWIND DSSLSAGPKI RFDPSESCED 60 VLGKILQELS ASNMKMPGPQ VLKWDIQSFV TYKRSTLPQY ALLKLKDMIV KGTDPRLATL 120 KERSGLSTTN QSGNVTSVDG IAVNGTKEMR EESNFKCLAQ NVNSVASTQE NNNREETLPD 180 RDLVLAKKRK SVSADHQGRE IPGGGSISEN GCDPCTRVTK KCKQSVVFNK DCEHIIEHIE 240 REGRSLGNES QAGALEESGS PLRQINGNQQ QHDCSVSEMP QGTNAGGGVK NICIDAAGEE 300 NAHAELRNSN DAKHPLVQQV SHANEAERNF QHNLSNGGPI NESRDIIDCF HGPDPCNDNN 360 EYHEESVEIA SKKTAFLSSQ CTHSQDSFAT NDLRELCMKC NRGGQLLVCS SETCPLVVHD 420 SCLGSIPNFE KDGKFYCPFC AYSRAISEHM KFKKKASLAR KDLTAFIRFS IEPLKNVSTR 480 SSRSKSSQSR QDDELCEKGE ANSSRNSLRD NSSPECRANS EDKQQEKPSV SPEGRPPSND 540 KSISSTSAMP VIFAKDPQEN QAEQDTLSPR GGDQQHNETL AITIYRKPVF PFGDPEVSNQ 600 DEPCTEVDVE KATVPQSVTS LHHQPESSSS TEVEESSDEE NEKYVTSKYF IRFNRPQKQC 660 SYPVITQWKR KRVPWTKEEE EALKEGVAKC KSIGQKNIAW KEILEFGGDR FWKGRTAMDL 720 KDKWRNICKG SPNKR

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MEDLVKRIPK ISDDLGRSAR EMVSFRILEN LLIKNNWIND DSSLSAGPKI RFDPSESCED  60
VLGKILQELS ASNMKMPGPQ VLKWDIQSFV TYKRSTLPQY ALLKLKDMIV KGTDPRLATL  120
KERSGLSTTN QSGNVTSVDG IAVNGTKEMR EESNFKCLAQ NVNSVASTQE NNNREETLPD  180
RDLVLAKKRK SVSADHQGRE IPGGGSISEN GCDPCTRVTK KCKQSVVFNK DCEHIIEHIE  240
REGRSLGNES QAGALEESGS PLRQINGNQQ QHDCSVSEMP QGTNAGGGVK NICIDAAGEE  300
NAHAELRNSN DAKHPLVQQV SHANEAERNF QHNLSNGGPI NESRDIIDCF HGPDPCNDNN  360
EYHEESVEIA SKKTAFLSSQ CTHSQDSFAT NDLRELCMKC NRGGQLLVCS SETCPLVVHD  420
SCLGSIPNFE KDGKFYCPFC AYSRAISEHM KFKKKASLAR KDLTAFIRFS IEPLKNVSTR  480
SSRSKSSQSR QDDELCEKGE ANSSRNSLRD NSSPECRANS EDKQQEKPSV SPEGRPPSND  540
KSISSTSAMP VIFAKDPQEN QAEQDTLSPR GGDQQHNETL AITIYRKPVF PFGDPEVSNQ  600
DEPCTEVDVE KATVPQSVTS LHHQPESSSS TEVEESSDEE NEKYVTSKYF IRFNRPQKQC  660
SYPVITQWKR KRVPWTKEEE EALKEGVAKC KSIGQKNIAW KEILEFGGDR FWKGRTAMDL  720
KDKWRNICKG SPNKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	223	KKRKSVSADHQGREIPGGGSISENGCDPCTRVTKKCK