PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173186.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GATA

Protein Properties

Length: 374aa MW: 40430 Da PI: 4.5192

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.1	1.9e-16	225	260	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg+++ Tp +Rrgpdg++tLCnaCGl ++ kg XP_019173186.1 225 CQHCGVSEngTPAMRRGPDGPRTLCNACGLVWANKG 260 ********************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MPAAMEAGNL TSLQPRPYDV PLRREFANVP VGADEVGGRF EADDVSGGGC EEDMRGAEVV 60 QVNSAAPPPC SVDGGAVISS FHIRPSELTV SFEGQVYVFP AVTPDKLQAV LLLLGGIETP 120 ENVPSTEFQS QQCNKVLEGA SPLAVCASTA PNVPRRIASL MRFREKRKER CFEKKIRYTC 180 RKEVAQRMHR KNGQFASMKE SDKTSVDIFE SGDGKPGSDP VLRSCQHCGV SENGTPAMRR 240 GPDGPRTLCN ACGLVWANKG ILRDLSKGGK NIAFSKSENS NQNPDEEGSP EEMKPMLMGN 300 ENPLIGPADQ DFREAAENYT DGSPIGIGNS SINPDEEETL DEFANASGSD FDISTSFDDE 360 VDIHSHMGTD WPGR

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MPAAMEAGNL TSLQPRPYDV PLRREFANVP VGADEVGGRF EADDVSGGGC EEDMRGAEVV  60
QVNSAAPPPC SVDGGAVISS FHIRPSELTV SFEGQVYVFP AVTPDKLQAV LLLLGGIETP  120
ENVPSTEFQS QQCNKVLEGA SPLAVCASTA PNVPRRIASL MRFREKRKER CFEKKIRYTC  180
RKEVAQRMHR KNGQFASMKE SDKTSVDIFE SGDGKPGSDP VLRSCQHCGV SENGTPAMRR  240
GPDGPRTLCN ACGLVWANKG ILRDLSKGGK NIAFSKSENS NQNPDEEGSP EEMKPMLMGN  300
ENPLIGPADQ DFREAAENYT DGSPIGIGNS SINPDEEETL DEFANASGSD FDISTSFDDE  360
VDIHSHMGTD WPGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	8e-54	GATA family protein