PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019173178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 25964.4 Da PI: 8.4971 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.7 | 3.5e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+ll+a+p+ r+++++sl+yeA r+ +P G++g++++++++l+q XP_019173178.1 4 SCNGCRVLRKGCSQNCSIRPCLqwiksPESQANATLFLAKFYGRAGLLNLLNAAPDRLRPEVFKSLLYEASGRIVNPLFGSTGLLSSGNWELCQN 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 +++++l ++ XP_019173178.1 99 AVDAVLKGA 107 *99988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MRMSCNGCRV LRKGCSQNCS IRPCLQWIKS PESQANATLF LAKFYGRAGL LNLLNAAPDR 60 LRPEVFKSLL YEASGRIVNP LFGSTGLLSS GNWELCQNAV DAVLKGAPIT PVASDATAAA 120 AVVLPLKACD IGHVHYKEGN RGKSGDLHRV RNRGRFKRSG AKIKESSICA GSSDEEVNRS 180 TSHESSLCHQ SPAANEEPES RQIQRLNSVE ISQPAPDVRH ADDDEIELEL TLGFAPRVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-66 | LBD family protein |