PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173093.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 541aa    MW: 59412.4 Da    PI: 5.9993
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.82.5e-941825412374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L+++Ae+++++  +la+ +Larl++  +s +g+p+qR+a+yf+e L++ l+       ++  ++++s+++ +++++a+k+fs++sPi+ fs 
  XP_019173093.1 182 VDELIRFAECFETNAVQLAHVILARLNHKlRSATGKPLQRAAFYFKESLQSLLTW------STRMTRPNSSSEIVHTIKAYKIFSNISPIPMFSS 270
                     678*************************98************************8......5566677777789********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++   + +p lRiT++++ e   + e + ++e+L++fA+ l++ f++++++ +++e
  XP_019173093.1 271 FTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAesaRAKPALRITALVPDE--YAVESRLIRENLTQFARDLNMAFDIDFVLIHTFE 363
                     ***************************************99666669**********55..99999***************************** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres 279
                      l+++++++ +gE++aV l+ +++r +            +++ ++++sP+vvv+v++e  +  + +sF + +++ le+ys+l++sl +a+++  s
  XP_019173093.1 364 LLSFKAIKFMEGEKIAVILSPSIFRRV---------GAGFVNDLRRISPHVVVHVDNEglVGFGPSSFRQTVIDGLEFYSTLLESLeAANIGGGS 449
                     *************************98.........347*******************65566999********************889999999 PP

            GRAS 280 ....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                         ++++k+E  +l ++i+++v ++g++        ++Wre++ +aGF+pv ls++a  qa++ll +v+++g++v +++++++l+W+dr+Lv++
  XP_019173093.1 450 ggggDWMRKIETYVLYPKIMEMVGAAGRR-------GASWREAFIAAGFRPVVLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVAT 537
                     99999**********************98.......89********************************************************* PP

            GRAS 371 SaWr 374
                     SaWr
  XP_019173093.1 538 SAWR 541
                     ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    
MKVSFTSNEN VSSKTSTLSS CGSNISIQAP AFPAAAAAAA GVISYEPKSV LELRRSPSPN  60
VPENAHNPPL DAAEISAGCD DPLQLADHVL TNFEDWDSLM KDLGLKEDTT KPNSESLPTQ  120
FPEFPLAHSL DSAQFLPSDH FSFSDNVTAA QYPPPAALSS GGNITASNDF QNHNWNLGFD  180
YVDELIRFAE CFETNAVQLA HVILARLNHK LRSATGKPLQ RAAFYFKESL QSLLTWSTRM  240
TRPNSSSEIV HTIKAYKIFS NISPIPMFSS FTANQAVLEA VDGSMLVHVI DFDIGLGGHW  300
ASFMKELADK AESARAKPAL RITALVPDEY AVESRLIREN LTQFARDLNM AFDIDFVLIH  360
TFELLSFKAI KFMEGEKIAV ILSPSIFRRV GAGFVNDLRR ISPHVVVHVD NEGLVGFGPS  420
SFRQTVIDGL EFYSTLLESL EAANIGGGSG GGGDWMRKIE TYVLYPKIME MVGAAGRRGA  480
SWREAFIAAG FRPVVLSQFA DFQADCLLGR VQVRGFHVAK RQAEMLLCWH DRALVATSAW  540
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-142GRAS family protein