PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172959.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25748.1 Da    PI: 8.4724
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.2e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++nrqvtfskRrng+lKKA+EL +LCdaev ++ifsstgkl+e++s
  XP_019172959.1 10 RIDNSTNRQVTFSKRRNGLLKKAKELGILCDAEVGLMIFSSTGKLHEFAS 59
                    8***********************************************86 PP
2K-box73.65.6e-2578172599
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke.lqeenkaLrkkl 98 
                     ++ ++ +++ + +q+e+a L+++++n+q+ +R+l+Ge L  Ls+keLq+Le+qLe sl+ iR kK+++l++qi+el +k+ + +++en +L kk+
  XP_019172959.1  78 QSPQNPASELKFWQTEAAILRQQLHNMQEDHRKLMGE-LYGLSVKELQNLENQLEMSLRGIRMKKEQILIDQIQELTNKQGSfVHQENLELFKKF 171
                     4444788999**************************8.9************************************99888662688998998887 PP

           K-box  99 e 99 
                     +
  XP_019172959.1 172 Q 172
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MGRGKVVIRR IDNSTNRQVT FSKRRNGLLK KAKELGILCD AEVGLMIFSS TGKLHEFAST  60
SMRSVIERYN KTQDESLQSP QNPASELKFW QTEAAILRQQ LHNMQEDHRK LMGELYGLSV  120
KELQNLENQL EMSLRGIRMK KEQILIDQIQ ELTNKQGSFV HQENLELFKK FQVYGTRDPN  180
TVNGDTISPY DFTISEESHA HIHLQLSQPQ PQNFSDRATA LDST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-89MIKC_MADS family protein