PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172930.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 315aa    MW: 35956.1 Da    PI: 9.1798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.7e-121197698
                    ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    ++ +v  ++rl++p + +++++ +   s  +++  +sg +W v++  +k++++ ++ +G ++F ++n +  +  ++Fk++++s+f  +v++f+
  XP_019172930.1 11 VRQSVIDQKRLRIPGELIQKYKDE--LSDVVKFCLPSGGEWGVNF--KKNKKMAWFDDGFESFMEDNSIGINYLLLFKYTKNSRF--NVHIFD 97
                    46789999*************755..7889***************..********************************999999..999997 PP
2B348.51.5e-15208296596
                     -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                     lt  dvl  + +++  +fa++   g   +++ + lede+g++W vk++   +s+r   lt GW+ Fv+ ++L +g ++vF+l+++    ++v+kv
  XP_019172930.1 208 LTECDVLGIN-MYVAADFARSLlPG---KPRSIYLEDENGKRWIVKCR--LRSRRvGDLTYGWRLFVQHKKLVAGNVCVFELVKDsLADKPVLKV 296
                     5666777777.99999***999633...4456***************5..444443579***********************9886677777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MQICNSFFAR VRQSVIDQKR LRIPGELIQK YKDELSDVVK FCLPSGGEWG VNFKKNKKMA  60
WFDDGFESFM EDNSIGINYL LLFKYTKNSR FNVHIFDLSA TEIDYPCNSH GAQKRCDPVK  120
GIPGGGGYCS TGDDGIDQSI FGSGMKRQRT TSPEGQRIYH SNESKVRKLK ERSVILDGSD  180
DANKHNIPKR EKIEGNVVLQ NPHFAVRLTE CDVLGINMYV AADFARSLLP GKPRSIYLED  240
ENGKRWIVKC RLRSRRVGDL TYGWRLFVQH KKLVAGNVCV FELVKDSLAD KPVLKVHIFP  300
SWEDLPQIDS HQFNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-23B3 family protein