PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172820.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 484aa MW: 55116.5 Da PI: 7.289

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.7	3.3e-17	64	150	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yne+A++vGFsvrk k+ ++ +++i +++f+Csk g++ + + + ++ trtg a ++ dg w v+k + HnHel+ XP_019172820.1 64 LYNEHAYRVGFSVRKGKQCYKASTKTIQMKRFYCSKAGFKCKADGG--VKLYSKIDTRTGSGAFVQFDVGGDGLWTVAKHMKVHNHELC 150 7******************9**************999988..88899*********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MELYVYIFDC YVYTVYVFSV NEGLVGDSLS TDQGDLNIDG SSSIPVDEDL VGVVVSNGDE 60 AFDLYNEHAY RVGFSVRKGK QCYKASTKTI QMKRFYCSKA GFKCKADGGV KLYSKIDTRT 120 GSGAFVQFDV GGDGLWTVAK HMKVHNHELC DLDKSHLLRS HRRVGSNQLS CLKDLKQSGV 180 GVAGGIRFLK HQSGGSPLVG FTSRDAYNSL AFDTVKSLDG TDSNSLIEIF RRRQSNESDF 240 FFDFEVDSDS RLCNFFWRDG QMRRDYELFG DLLVHDTTYR TNKYDMICGP FVGMNHHCMN 300 VMFGCGFLKN ERIESFVWLF KAFLRSMDGK CQQSIMTDQC AAMAAAISIV FPSSRHRLCI 360 WHIDTEAEFE FYWTRMVTEF KCHKNTWLGK IYDCREKWCP AFNKDYFSGG ILPSQRSETT 420 NHSISRRLSK TAGLCDFYSS FVSVISEWRS KENGEDFRCA QGVPAMMIDN VKLLSHAREL 480 QTVF

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MELYVYIFDC YVYTVYVFSV NEGLVGDSLS TDQGDLNIDG SSSIPVDEDL VGVVVSNGDE  60
AFDLYNEHAY RVGFSVRKGK QCYKASTKTI QMKRFYCSKA GFKCKADGGV KLYSKIDTRT  120
GSGAFVQFDV GGDGLWTVAK HMKVHNHELC DLDKSHLLRS HRRVGSNQLS CLKDLKQSGV  180
GVAGGIRFLK HQSGGSPLVG FTSRDAYNSL AFDTVKSLDG TDSNSLIEIF RRRQSNESDF  240
FFDFEVDSDS RLCNFFWRDG QMRRDYELFG DLLVHDTTYR TNKYDMICGP FVGMNHHCMN  300
VMFGCGFLKN ERIESFVWLF KAFLRSMDGK CQQSIMTDQC AAMAAAISIV FPSSRHRLCI  360
WHIDTEAEFE FYWTRMVTEF KCHKNTWLGK IYDCREKWCP AFNKDYFSGG ILPSQRSETT  420
NHSISRRLSK TAGLCDFYSS FVSVISEWRS KENGEDFRCA QGVPAMMIDN VKLLSHAREL  480
QTVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-61	FAR1 family protein