PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172336.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 361aa MW: 41009.7 Da PI: 6.0737

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.5	1.5e-54	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+++el ++i+evd+yk+ePwdLp k + +++ ewyf s+rd+ky++g+r+nratk+gyWkatgkd++v XP_019172336.1 9 LPPGFRFHPTDEELVAYYLKRKINGHSIEL-DIIPEVDLYKCEPWDLPgKaLLPSKDLEWYFISPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 102 79**************************.99***********6434555777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s + ++vg+kktLv+++grap+g +tdW+mheyrl XP_019172336.1 103 S-EMREVGMKKTLVYHRGRAPHGARTDWIMHEYRL 136 .9999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MEAMATVSLP PGFRFHPTDE ELVAYYLKRK INGHSIELDI IPEVDLYKCE PWDLPGKALL 60 PSKDLEWYFI SPRDRKYPNG SRTNRATKAG YWKATGKDRK VNSEMREVGM KKTLVYHRGR 120 APHGARTDWI MHEYRLDERE CETRSGLQDA YALCRVFKKS LNGLKIGENS GAAAASDRSS 180 YDETESSPYA MAAAPSSSAT CSSPMAAGGD GSLFNNVPGD HRYWMQFLSS DEAFRFHNNN 240 PSHRFMLPPM EFHQSSFVPE YAINHGSHDE ILSVAHHHHH NHHQAALSGF SDDYFPFVPQ 300 NEELGDMDSS LLTEQQNVHD DQQNVGEELR SDRMVENLRW VGVLDKEDLE KVILDHSAIL 360 V

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MEAMATVSLP PGFRFHPTDE ELVAYYLKRK INGHSIELDI IPEVDLYKCE PWDLPGKALL  60
PSKDLEWYFI SPRDRKYPNG SRTNRATKAG YWKATGKDRK VNSEMREVGM KKTLVYHRGR  120
APHGARTDWI MHEYRLDERE CETRSGLQDA YALCRVFKKS LNGLKIGENS GAAAASDRSS  180
YDETESSPYA MAAAPSSSAT CSSPMAAGGD GSLFNNVPGD HRYWMQFLSS DEAFRFHNNN  240
PSHRFMLPPM EFHQSSFVPE YAINHGSHDE ILSVAHHHHH NHHQAALSGF SDDYFPFVPQ  300
NEELGDMDSS LLTEQQNVHD DQQNVGEELR SDRMVENLRW VGVLDKEDLE KVILDHSAIL  360
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-105	NAC family protein