PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172253.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 1476aa MW: 161828 Da PI: 6.9967

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.7e-06	1452	1476	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k + C+ f+++G Ck G++C + H+ XP_019172253.1 1452 PKARVCK-FYESGRCKKGASCDYLHP 1476 57789.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1476 aa Download sequence
MDSNSELYRL SLGAVESQRF DRDTTAVRRE SLEAAQGKCT SFVQGMDGAQ LVGGPVMQVG 60 GGMAPSTVAA GVNTSVATVI GPEKRKRGRP PRGQAAGKPP PPKRKVEEEE EDVCFICFDG 120 GSLVLCDRKG CPKAYHPACI KRDEAFFRSK AKWNCGWHIC SVCQKASHYM CYTCTYSLCK 180 GCITNADYFS VRGNKGFCST CMRTIMLIEN KDEANKETVQ VDFDDKSSWE YLFKVYWMYL 240 KGKLSLTLNE LIQAKNPWKE AVAAQSNLQL ANANDSKGVF GKPSEQIEVK NHMEREEIAK 300 KDSLSSENQS AAKSENAGIA ISNEHLGLMN PNVPQNNDKL GSANGSDMTG YTEWATKELL 360 EFVAHMKNGD TSALSQFDVQ ALLLDYIKRN NLRDPHKKSQ IICDLRLKNL FGKPRLGHIE 420 MLKLIEFHFL IKEDTQKNAF IPAGIVGDIS SHLETDESSI NSSLINKNKK RKTCKKGEEK 480 APQVSLDEYA AIDAHNINLI YLRRSLMENL MEDTQKFHDD VVGSIVRIKI TGSDQKQDMY 540 RLVHVVGTSK VSTPYKIGEK TTDIMLEVLN LDKKEAVAID TLSNQEFSED ECRRLRQSIK 600 CGLVKRMTVG EIQKKAMALR PVKLNESLET EILRLNHLRD RASENGRKKD LRECIEKLQC 660 LKTPEERRRR MLEIPEVHTD PKMNPNYESE EDAGGSDDKK QDENLRQRNP RLNKSGSKQI 720 PPPMKKVKVE GAVIALMAQN KPNEKRQASG VHTLGNRGNQ TSVCGSVISG QVDKSVVRCG 780 SETSVASLST GNSAPSSDDS ETEKLWHYRD PSGQIQGPFS MMQLRRWNKT GLFPPDMRVW 840 ISDKHNESIL LSDALHGQFH KASQILDNAT LKDQGLEAAL DSRGHAGWHG SSNGTVKESE 900 GHHSDDKVHP NAVRTDELKP RPLLQCLNLL KENNSCSDKP QECNMMHSSS DGQVHLGLAQ 960 QEIGHDSGGL HTDSDTGQGN QKLYGNTMSQ PTDMASHEMQ YNMQSIMGQI FGSLPVSNSE 1020 NTDSGTHLAS VTKSSDSPDQ NGKINVSDLP SPTPKSTYES WEVQAAKELL SLSSDFPFHR 1080 SGIQDMPSPP PKASNDNQCG QTTETKEHLP TNIPVQASGP SQITSLVVNG VQLPEVTEWG 1140 GNSPTPKPSV EDWDPGLVSV SSLKPPEVLG DQVATPASNA DQLTHSSPPS NVIEFSTLAE 1200 ESVSDLLAEV DAMESQAQSG LGSPTSAMRC SVDLMQWSKS DFSSIEEMSP ALGPAKSDAY 1260 SSTGDIQLPC QSPVTNELVR RGQTDAFDPP KRCNGHSSTS SEGETKSTDV SFSKGHSGSE 1320 VRLPVPCTVS QNTVVSAMDQ SRGSEAMVTG WGTTQGNANY GAPQSVQGYA NPGPGTSPKP 1380 AWRNPNTNRS AYNGNPAWDS QRRHSAERFP GPRDWAFQGG HSGHGSRSRP AWNRQSYSGS 1440 GGGGGGHSRP PPKARVCKFY ESGRCKKGAS CDYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1476 aa Download sequence

MDSNSELYRL SLGAVESQRF DRDTTAVRRE SLEAAQGKCT SFVQGMDGAQ LVGGPVMQVG  60
GGMAPSTVAA GVNTSVATVI GPEKRKRGRP PRGQAAGKPP PPKRKVEEEE EDVCFICFDG  120
GSLVLCDRKG CPKAYHPACI KRDEAFFRSK AKWNCGWHIC SVCQKASHYM CYTCTYSLCK  180
GCITNADYFS VRGNKGFCST CMRTIMLIEN KDEANKETVQ VDFDDKSSWE YLFKVYWMYL  240
KGKLSLTLNE LIQAKNPWKE AVAAQSNLQL ANANDSKGVF GKPSEQIEVK NHMEREEIAK  300
KDSLSSENQS AAKSENAGIA ISNEHLGLMN PNVPQNNDKL GSANGSDMTG YTEWATKELL  360
EFVAHMKNGD TSALSQFDVQ ALLLDYIKRN NLRDPHKKSQ IICDLRLKNL FGKPRLGHIE  420
MLKLIEFHFL IKEDTQKNAF IPAGIVGDIS SHLETDESSI NSSLINKNKK RKTCKKGEEK  480
APQVSLDEYA AIDAHNINLI YLRRSLMENL MEDTQKFHDD VVGSIVRIKI TGSDQKQDMY  540
RLVHVVGTSK VSTPYKIGEK TTDIMLEVLN LDKKEAVAID TLSNQEFSED ECRRLRQSIK  600
CGLVKRMTVG EIQKKAMALR PVKLNESLET EILRLNHLRD RASENGRKKD LRECIEKLQC  660
LKTPEERRRR MLEIPEVHTD PKMNPNYESE EDAGGSDDKK QDENLRQRNP RLNKSGSKQI  720
PPPMKKVKVE GAVIALMAQN KPNEKRQASG VHTLGNRGNQ TSVCGSVISG QVDKSVVRCG  780
SETSVASLST GNSAPSSDDS ETEKLWHYRD PSGQIQGPFS MMQLRRWNKT GLFPPDMRVW  840
ISDKHNESIL LSDALHGQFH KASQILDNAT LKDQGLEAAL DSRGHAGWHG SSNGTVKESE  900
GHHSDDKVHP NAVRTDELKP RPLLQCLNLL KENNSCSDKP QECNMMHSSS DGQVHLGLAQ  960
QEIGHDSGGL HTDSDTGQGN QKLYGNTMSQ PTDMASHEMQ YNMQSIMGQI FGSLPVSNSE  1020
NTDSGTHLAS VTKSSDSPDQ NGKINVSDLP SPTPKSTYES WEVQAAKELL SLSSDFPFHR  1080
SGIQDMPSPP PKASNDNQCG QTTETKEHLP TNIPVQASGP SQITSLVVNG VQLPEVTEWG  1140
GNSPTPKPSV EDWDPGLVSV SSLKPPEVLG DQVATPASNA DQLTHSSPPS NVIEFSTLAE  1200
ESVSDLLAEV DAMESQAQSG LGSPTSAMRC SVDLMQWSKS DFSSIEEMSP ALGPAKSDAY  1260
SSTGDIQLPC QSPVTNELVR RGQTDAFDPP KRCNGHSSTS SEGETKSTDV SFSKGHSGSE  1320
VRLPVPCTVS QNTVVSAMDQ SRGSEAMVTG WGTTQGNANY GAPQSVQGYA NPGPGTSPKP  1380
AWRNPNTNRS AYNGNPAWDS QRRHSAERFP GPRDWAFQGG HSGHGSRSRP AWNRQSYSGS  1440
GGGGGGHSRP PPKARVCKFY ESGRCKKGAS CDYLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	0.0	C3H family protein