PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172252.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 1477aa MW: 161956 Da PI: 6.9967

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.7e-06	1453	1477	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k + C+ f+++G Ck G++C + H+ XP_019172252.1 1453 PKARVCK-FYESGRCKKGASCDYLHP 1477 57789.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1477 aa Download sequence
MDSNSELYRL SLGAVESQRF DRDTTAVRRE SLEAAQGKCT SFVQGMDGAQ LVGGPVMQVG 60 GGMAPSTVAA GVNTSVATVI GPEKRKRGRP PRGQAAGKPP PPKRKVEEEE EDVCFICFDG 120 GSLVLCDRKG CPKAYHPACI KRDEAFFRSK AKWNCGWHIC SVCQKASHYM CYTCTYSLCK 180 GCITNADYFS VRGNKGFCST CMRTIMLIEN KDEANKETQV QVDFDDKSSW EYLFKVYWMY 240 LKGKLSLTLN ELIQAKNPWK EAVAAQSNLQ LANANDSKGV FGKPSEQIEV KNHMEREEIA 300 KKDSLSSENQ SAAKSENAGI AISNEHLGLM NPNVPQNNDK LGSANGSDMT GYTEWATKEL 360 LEFVAHMKNG DTSALSQFDV QALLLDYIKR NNLRDPHKKS QIICDLRLKN LFGKPRLGHI 420 EMLKLIEFHF LIKEDTQKNA FIPAGIVGDI SSHLETDESS INSSLINKNK KRKTCKKGEE 480 KAPQVSLDEY AAIDAHNINL IYLRRSLMEN LMEDTQKFHD DVVGSIVRIK ITGSDQKQDM 540 YRLVHVVGTS KVSTPYKIGE KTTDIMLEVL NLDKKEAVAI DTLSNQEFSE DECRRLRQSI 600 KCGLVKRMTV GEIQKKAMAL RPVKLNESLE TEILRLNHLR DRASENGRKK DLRECIEKLQ 660 CLKTPEERRR RMLEIPEVHT DPKMNPNYES EEDAGGSDDK KQDENLRQRN PRLNKSGSKQ 720 IPPPMKKVKV EGAVIALMAQ NKPNEKRQAS GVHTLGNRGN QTSVCGSVIS GQVDKSVVRC 780 GSETSVASLS TGNSAPSSDD SETEKLWHYR DPSGQIQGPF SMMQLRRWNK TGLFPPDMRV 840 WISDKHNESI LLSDALHGQF HKASQILDNA TLKDQGLEAA LDSRGHAGWH GSSNGTVKES 900 EGHHSDDKVH PNAVRTDELK PRPLLQCLNL LKENNSCSDK PQECNMMHSS SDGQVHLGLA 960 QQEIGHDSGG LHTDSDTGQG NQKLYGNTMS QPTDMASHEM QYNMQSIMGQ IFGSLPVSNS 1020 ENTDSGTHLA SVTKSSDSPD QNGKINVSDL PSPTPKSTYE SWEVQAAKEL LSLSSDFPFH 1080 RSGIQDMPSP PPKASNDNQC GQTTETKEHL PTNIPVQASG PSQITSLVVN GVQLPEVTEW 1140 GGNSPTPKPS VEDWDPGLVS VSSLKPPEVL GDQVATPASN ADQLTHSSPP SNVIEFSTLA 1200 EESVSDLLAE VDAMESQAQS GLGSPTSAMR CSVDLMQWSK SDFSSIEEMS PALGPAKSDA 1260 YSSTGDIQLP CQSPVTNELV RRGQTDAFDP PKRCNGHSST SSEGETKSTD VSFSKGHSGS 1320 EVRLPVPCTV SQNTVVSAMD QSRGSEAMVT GWGTTQGNAN YGAPQSVQGY ANPGPGTSPK 1380 PAWRNPNTNR SAYNGNPAWD SQRRHSAERF PGPRDWAFQG GHSGHGSRSR PAWNRQSYSG 1440 SGGGGGGHSR PPPKARVCKF YESGRCKKGA SCDYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1477 aa Download sequence

MDSNSELYRL SLGAVESQRF DRDTTAVRRE SLEAAQGKCT SFVQGMDGAQ LVGGPVMQVG  60
GGMAPSTVAA GVNTSVATVI GPEKRKRGRP PRGQAAGKPP PPKRKVEEEE EDVCFICFDG  120
GSLVLCDRKG CPKAYHPACI KRDEAFFRSK AKWNCGWHIC SVCQKASHYM CYTCTYSLCK  180
GCITNADYFS VRGNKGFCST CMRTIMLIEN KDEANKETQV QVDFDDKSSW EYLFKVYWMY  240
LKGKLSLTLN ELIQAKNPWK EAVAAQSNLQ LANANDSKGV FGKPSEQIEV KNHMEREEIA  300
KKDSLSSENQ SAAKSENAGI AISNEHLGLM NPNVPQNNDK LGSANGSDMT GYTEWATKEL  360
LEFVAHMKNG DTSALSQFDV QALLLDYIKR NNLRDPHKKS QIICDLRLKN LFGKPRLGHI  420
EMLKLIEFHF LIKEDTQKNA FIPAGIVGDI SSHLETDESS INSSLINKNK KRKTCKKGEE  480
KAPQVSLDEY AAIDAHNINL IYLRRSLMEN LMEDTQKFHD DVVGSIVRIK ITGSDQKQDM  540
YRLVHVVGTS KVSTPYKIGE KTTDIMLEVL NLDKKEAVAI DTLSNQEFSE DECRRLRQSI  600
KCGLVKRMTV GEIQKKAMAL RPVKLNESLE TEILRLNHLR DRASENGRKK DLRECIEKLQ  660
CLKTPEERRR RMLEIPEVHT DPKMNPNYES EEDAGGSDDK KQDENLRQRN PRLNKSGSKQ  720
IPPPMKKVKV EGAVIALMAQ NKPNEKRQAS GVHTLGNRGN QTSVCGSVIS GQVDKSVVRC  780
GSETSVASLS TGNSAPSSDD SETEKLWHYR DPSGQIQGPF SMMQLRRWNK TGLFPPDMRV  840
WISDKHNESI LLSDALHGQF HKASQILDNA TLKDQGLEAA LDSRGHAGWH GSSNGTVKES  900
EGHHSDDKVH PNAVRTDELK PRPLLQCLNL LKENNSCSDK PQECNMMHSS SDGQVHLGLA  960
QQEIGHDSGG LHTDSDTGQG NQKLYGNTMS QPTDMASHEM QYNMQSIMGQ IFGSLPVSNS  1020
ENTDSGTHLA SVTKSSDSPD QNGKINVSDL PSPTPKSTYE SWEVQAAKEL LSLSSDFPFH  1080
RSGIQDMPSP PPKASNDNQC GQTTETKEHL PTNIPVQASG PSQITSLVVN GVQLPEVTEW  1140
GGNSPTPKPS VEDWDPGLVS VSSLKPPEVL GDQVATPASN ADQLTHSSPP SNVIEFSTLA  1200
EESVSDLLAE VDAMESQAQS GLGSPTSAMR CSVDLMQWSK SDFSSIEEMS PALGPAKSDA  1260
YSSTGDIQLP CQSPVTNELV RRGQTDAFDP PKRCNGHSST SSEGETKSTD VSFSKGHSGS  1320
EVRLPVPCTV SQNTVVSAMD QSRGSEAMVT GWGTTQGNAN YGAPQSVQGY ANPGPGTSPK  1380
PAWRNPNTNR SAYNGNPAWD SQRRHSAERF PGPRDWAFQG GHSGHGSRSR PAWNRQSYSG  1440
SGGGGGGHSR PPPKARVCKF YESGRCKKGA SCDYLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	0.0	C3H family protein