PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172123.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 835aa    MW: 92885.5 Da    PI: 6.437
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.6e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       ++ ++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  XP_019172123.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLTPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 218
                     99*****************************9666655.49************************************************..8999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_019172123.1 219 NQLWLGIRRA 228
                     999*****97 PP
2Auxin_resp117.41.2e-38253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv+ ++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  XP_019172123.1 253 AAHAAATNSCFTVFYNPRASPSEFVIALSKYIKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    
MKLSTSGIGQ QPHEGENKCL NSELWHACAG PLVCLPSVGS RVVYFPQGHS EQVAATTNKE  60
VDGQIPNYPN LPAQLICQLH NVTMHADVET DEVYAQMTLQ PLTLEEQKDT YLPVELGIPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSL TPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LWLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIAL SKYIKAVYHT RISVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYSSLFP LRLKRPWYPG PSSFQDSNNE VINGMTWLRG EIGEQGGPQS VNLQSFGMLP  420
WMQQRVDPAM LRTDYNQQYQ AMLAAGLQNF GNADLFKQQL MQFQQPAQYL QASGSHNPLL  480
QQQQQVIQQP MSSHMLPAQT QMLSDSLQRH PQQQTSGQTE EPTQQHAYQE AFPVSHDQLQ  540
QRPLSNIPSP SFSKTNFAPP VSPSSMQSML GSLCPEGSSN LLNFKRTGQS ALNEHQPQVQ  600
QSWLPKFANS HISTCSNSVS TPSYPGKEAS SQQETCALDA QNQSFFGASI DSPGLLLPTT  660
LSSVTTSVVA DVSSLPSGAS GFQNSPYGYV QDSSELVSSA GQVDPSTPRT FIKVYKSGYV  720
GRSLDITRIS SYHELRQELA QMFGIEGLLE DPQRSGWQLV FVDRENDVLL LGDDPWEAFV  780
NNVWYIKILS PEDVQKLGKQ EAKSLSRNTM ERMNGSGADG RDHLSGFPSL GSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein