PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172005.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 1062aa MW: 118046 Da PI: 7.3433

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125	3.1e-39	137	214	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+++l++ak+yhrrhkvCe+hsk +++lv++++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+ XP_019172005.1 137 MCQVDNCRENLTNAKDYHRRHKVCEIHSKVSKALVRDQMQRFCQQCSRFHLLLEFDEGKRSCRRRLAGHNKRRRKTQP 214 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1062 aa Download sequence
MEELSAGVVS PMLIHHQQLG GCLPHSMAKK RSLSFQSINM AQQRNPLDTW NPKAWEWDST 60 RFLAKRKEYG AVPVQPKRRE EQMDDPKKTI HVVEDDETLR LNLGGTGGCK LNSAEELTVQ 120 PNKRVRSGSP NGGNYPMCQV DNCRENLTNA KDYHRRHKVC EIHSKVSKAL VRDQMQRFCQ 180 QCSRFHLLLE FDEGKRSCRR RLAGHNKRRR KTQPEDTTPR PLLPGNNDNS GNRNLDIVNL 240 LAVLASEQGN NDPGSANIPL VPDKDQIMEI LSKIKSLPLP ANLVDKLPAS GSSSQTSANQ 300 LSPGFKANES ISSPSTLDLL SPLSATPAAG SSDAVDIQSQ RSSQGSDTER STLTCVEKVK 360 WLNLQERPPL ELLSVQGDRT SASFQSTDDL DFQVHETRSH LPLQLFSSQT EDDSPPRLAG 420 CGKYFSSESS NPSAERSPSS SPHVEHKLFP MQISNETVKP HCTFASREET QENKNLNATK 480 KSGCITSLKL FGGSIAGADI GSIQNPAYRT GYTSSYGSDH SPSSTNSDAR DRTGRIIFKL 540 FDKDPSHLPG TLRTQIYNWL SKIPSEMESY IRPGCIVLSL YLSMPPSVWE QLEENLFQYA 600 NALVKEVDPQ FWASGRFLIR TDKQLALHKD GNIRVCKLWR ERKSPELIYV SPLAVISGQE 660 IYLTLKGRNL NFPGTKINCT HAGGYTIRSV PSSACQENAC EEIILGNFVI DDTDPSLLGR 720 GFIEVENGFG GSTFPVIIAD NAVCEELRCL ESEIIEIVKV PKAVDFWMPR SREEVVHFLN 780 ELGWVFQRKG NSSMFEGPDF MISRFKFLFI FSVEHDFCAV VKTLLEILLE ITLVREASRE 840 SLEMLFELQL LSRAVKRKCR KMVDLLVHYS ICASGGSPIN YIFTPNLTGP GGITPLHLAA 900 CTSNSDDIVD ALTSDPQEIG LHCWKSVLDE NGVSPCAYAS MRNNDSYNKL VSQKLSVREK 960 GKEICLVIGN EVEEEQEHKP PTAAAACQVN KEPKSCSKCA SAAIMRYNSR PRSPRGLMYR 1020 PYIHSLLAIA AVCACVCIFF RGSPDIGSVA PLKWENLDFG AI

Sequence ? help Back to Top

Protein Sequence Length: 1062 aa Download sequence

MEELSAGVVS PMLIHHQQLG GCLPHSMAKK RSLSFQSINM AQQRNPLDTW NPKAWEWDST  60
RFLAKRKEYG AVPVQPKRRE EQMDDPKKTI HVVEDDETLR LNLGGTGGCK LNSAEELTVQ  120
PNKRVRSGSP NGGNYPMCQV DNCRENLTNA KDYHRRHKVC EIHSKVSKAL VRDQMQRFCQ  180
QCSRFHLLLE FDEGKRSCRR RLAGHNKRRR KTQPEDTTPR PLLPGNNDNS GNRNLDIVNL  240
LAVLASEQGN NDPGSANIPL VPDKDQIMEI LSKIKSLPLP ANLVDKLPAS GSSSQTSANQ  300
LSPGFKANES ISSPSTLDLL SPLSATPAAG SSDAVDIQSQ RSSQGSDTER STLTCVEKVK  360
WLNLQERPPL ELLSVQGDRT SASFQSTDDL DFQVHETRSH LPLQLFSSQT EDDSPPRLAG  420
CGKYFSSESS NPSAERSPSS SPHVEHKLFP MQISNETVKP HCTFASREET QENKNLNATK  480
KSGCITSLKL FGGSIAGADI GSIQNPAYRT GYTSSYGSDH SPSSTNSDAR DRTGRIIFKL  540
FDKDPSHLPG TLRTQIYNWL SKIPSEMESY IRPGCIVLSL YLSMPPSVWE QLEENLFQYA  600
NALVKEVDPQ FWASGRFLIR TDKQLALHKD GNIRVCKLWR ERKSPELIYV SPLAVISGQE  660
IYLTLKGRNL NFPGTKINCT HAGGYTIRSV PSSACQENAC EEIILGNFVI DDTDPSLLGR  720
GFIEVENGFG GSTFPVIIAD NAVCEELRCL ESEIIEIVKV PKAVDFWMPR SREEVVHFLN  780
ELGWVFQRKG NSSMFEGPDF MISRFKFLFI FSVEHDFCAV VKTLLEILLE ITLVREASRE  840
SLEMLFELQL LSRAVKRKCR KMVDLLVHYS ICASGGSPIN YIFTPNLTGP GGITPLHLAA  900
CTSNSDDIVD ALTSDPQEIG LHCWKSVLDE NGVSPCAYAS MRNNDSYNKL VSQKLSVREK  960
GKEICLVIGN EVEEEQEHKP PTAAAACQVN KEPKSCSKCA SAAIMRYNSR PRSPRGLMYR  1020
PYIHSLLAIA AVCACVCIFF RGSPDIGSVA PLKWENLDFG AI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein