PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019171941.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 714aa    MW: 80719 Da    PI: 5.4489
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019171941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.11.3e-1093397122374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL+ cA+av+ +d + a+ +L+++++++s++gd mqRla+yf+ AL+ar+a+s++++ykal   +      +++l+a++l+   +P+ k++++
  XP_019171941.1 339 RSLLTLCAQAVAVEDIRTANDYLKHIRQHSSQTGDDMQRLAHYFADALEARIAGSGTRIYKALVKYPRY---AARALKAFHLYLSSCPFRKIANM 430
                     689************************************************************999988...899******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                       N++I   +++++ +HiiDf+i+   G+QWp+L+q L+sRp+gpp+lRiTg++ p+sg   +e+ e tg+ L+ +A++++vpfefn+ +ak++e
  XP_019171941.1 431 FSNKTITTLAQNASSLHIIDFGIGtlFGFQWPCLIQHLSSRPGGPPKLRITGIDFPQSGfrPAERAEGTGRLLTYYAQKFNVPFEFNA-IAKKWE 524
                     ***********************8446*******************************9*9***************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     ++++e+L++ +gE+l+Vn+ ++l +lld++v ++s  +rd+vLkl+ ++ P+v+++   ++ +n++ F  rf  al++ysa+fd+lea++pre +
  XP_019171941.1 525 TITVEDLKIIEGEVLVVNCLYRLRNLLDDTVVVNSlsPRDTVLKLIHDVHPDVFIHGILNSACNAPFFTSRFRAALSHYSAVFDMLEATIPREVH 619
                     *******************************999998********************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     er+ +E  ++g++++n++ace +er+er et++ W++r ++aGF ++pl+ +++k   ++l+ ++++ + ++e+ ++l+lgWk+r+L+++S+W+
  XP_019171941.1 620 ERMLIESYIFGQQAMNAIACEDTERVERPETYKMWQARNTRAGFLQLPLNREIVKMSMHMLKLYHKE-FVIDEDGHWLLLGWKGRALFALSSWK 712
                     *****************************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    
MDRGPYETTS QFNFEDETPP IFPNPNLVNW QNLGVEGLST FSYPTSMANE GVCETLVDRN  60
EEMGNLNNEE APVPQSGQRL NVVNLLNEDG GYEDYDLRDQ MLKWINQMLM EDNVEKQAYM  120
FRQSAALKDA ERSFYELIGE EYPPSPNLHR VPDLDRNENY GNDDSLCPNW DSNPRDHVPV  180
GVASSTTSQS SSSLGQGTVN DGTVDFATST ITIPDISNCI ESVEKGVREA SSFLPTRNSL  240
LVDGVGVEKN TGNQDLLEGR RGKKNMFRED MHLAEERCYK QSAIYVEPSV KQEEFDEVLL  300
CSEEDESNLC HSLRSVSCDS KGSNRKKSSG SKRAVVDFRS LLTLCAQAVA VEDIRTANDY  360
LKHIRQHSSQ TGDDMQRLAH YFADALEARI AGSGTRIYKA LVKYPRYAAR ALKAFHLYLS  420
SCPFRKIANM FSNKTITTLA QNASSLHIID FGIGTLFGFQ WPCLIQHLSS RPGGPPKLRI  480
TGIDFPQSGF RPAERAEGTG RLLTYYAQKF NVPFEFNAIA KKWETITVED LKIIEGEVLV  540
VNCLYRLRNL LDDTVVVNSL SPRDTVLKLI HDVHPDVFIH GILNSACNAP FFTSRFRAAL  600
SHYSAVFDML EATIPREVHE RMLIESYIFG QQAMNAIACE DTERVERPET YKMWQARNTR  660
AGFLQLPLNR EIVKMSMHML KLYHKEFVID EDGHWLLLGW KGRALFALSS WKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-168GRAS family protein