PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019171940.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 725aa    MW: 81822.1 Da    PI: 5.2871
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019171940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3581.4e-1093507232374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL+ cA+av+ +d + a+ +L+++++++s++gd mqRla+yf+ AL+ar+a+s++++ykal   +      +++l+a++l+   +P+ k++++
  XP_019171940.1 350 RSLLTLCAQAVAVEDIRTANDYLKHIRQHSSQTGDDMQRLAHYFADALEARIAGSGTRIYKALVKYPRY---AARALKAFHLYLSSCPFRKIANM 441
                     689************************************************************999988...899******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                       N++I   +++++ +HiiDf+i+   G+QWp+L+q L+sRp+gpp+lRiTg++ p+sg   +e+ e tg+ L+ +A++++vpfefn+ +ak++e
  XP_019171940.1 442 FSNKTITTLAQNASSLHIIDFGIGtlFGFQWPCLIQHLSSRPGGPPKLRITGIDFPQSGfrPAERAEGTGRLLTYYAQKFNVPFEFNA-IAKKWE 535
                     ***********************8446*******************************9*9***************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     ++++e+L++ +gE+l+Vn+ ++l +lld++v ++s  +rd+vLkl+ ++ P+v+++   ++ +n++ F  rf  al++ysa+fd+lea++pre +
  XP_019171940.1 536 TITVEDLKIIEGEVLVVNCLYRLRNLLDDTVVVNSlsPRDTVLKLIHDVHPDVFIHGILNSACNAPFFTSRFRAALSHYSAVFDMLEATIPREVH 630
                     *******************************999998********************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     er+ +E  ++g++++n++ace +er+er et++ W++r ++aGF ++pl+ +++k   ++l+ ++++ + ++e+ ++l+lgWk+r+L+++S+W+
  XP_019171940.1 631 ERMLIESYIFGQQAMNAIACEDTERVERPETYKMWQARNTRAGFLQLPLNREIVKMSMHMLKLYHKE-FVIDEDGHWLLLGWKGRALFALSSWK 723
                     *****************************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    
MDRGPYETTS QFNFEDETPP IFPNPNLVNW QNLGVEGLST FSYPTSMANE GVCETLVDRN  60
EEMGNLNNEE APVPQSGQRL NVVNLLNEDG GYEDYDLRDQ MLKWINQMLM EDNVEKQAYM  120
FRQSAALKDA ERSFYELIGE EYPPSPNLHR VPDLDRNENY GDSSYYGSGD NGNDDSLCPN  180
WDSNPRDHVP VGVASSTTSQ SSSSLGQGTV NDGTVDFATS TITIPDISNC IESVEKGVRE  240
ASSFLPTRNS LLVDGVGVEK NTGNQDLLEG RRGKKNMFRE DMHLAEERCY KQSAIYVEPS  300
VKQEEFDEVL LCSEEDESNL CHSLRSVSCD SKGSNRKKSS GSKRAVVDFR SLLTLCAQAV  360
AVEDIRTAND YLKHIRQHSS QTGDDMQRLA HYFADALEAR IAGSGTRIYK ALVKYPRYAA  420
RALKAFHLYL SSCPFRKIAN MFSNKTITTL AQNASSLHII DFGIGTLFGF QWPCLIQHLS  480
SRPGGPPKLR ITGIDFPQSG FRPAERAEGT GRLLTYYAQK FNVPFEFNAI AKKWETITVE  540
DLKIIEGEVL VVNCLYRLRN LLDDTVVVNS LSPRDTVLKL IHDVHPDVFI HGILNSACNA  600
PFFTSRFRAA LSHYSAVFDM LEATIPREVH ERMLIESYIF GQQAMNAIAC EDTERVERPE  660
TYKMWQARNT RAGFLQLPLN REIVKMSMHM LKLYHKEFVI DEDGHWLLLG WKGRALFALS  720
SWKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-162GRAS family protein