PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019171921.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 25127.7 Da PI: 8.4608 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110 | 1.7e-34 | 12 | 105 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++r+kC+++Cvlap fpae++++f++vhk+FG+snv+k++++l+eeer +a++slv+eA +r++dPv G +g ++++ ++l+ k++ XP_019171921.1 12 ACASCKHQRKKCTEKCVLAPFFPAEKSREFQAVHKVFGVSNVTKMVRNLKEEERGRAVESLVWEAICRQNDPVLGPLGEYRRVYEELKLYKNQY 105 7************************************************************************************999998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MQRSNGSTTS SACASCKHQR KKCTEKCVLA PFFPAEKSRE FQAVHKVFGV SNVTKMVRNL 60 KEEERGRAVE SLVWEAICRQ NDPVLGPLGE YRRVYEELKL YKNQYEPTGG MVIGWNNAAA 120 AANNNDGNNN NVVHNNNDNN NNNSLNYIHS NGNNNSVVGY NNYPINHPQN FEKLRRESDN 180 GSTVILPARQ HPINGFNQQY FIAAGQYNPA DTKSMESSLW DGVS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-44 | LBD family protein |