PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171896.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 440aa MW: 47182.6 Da PI: 9.4331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	202	224	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ Fs ++ ++H + H XP_019171896.1 202 TCHKCGEQFSKWDAVESHHLSqH 224 8*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MPAAVWFSLK KSLNCRSEVG EVHDPNYRGG RNLGKISTST RKSSTIRSGC SRSIANLKDV 60 VIHGSKRHTE NPQLQSPRSI GSSELLNPIV HEVVLNNSTC ELKITSYPFQ DGNGCGGSSS 120 GGGGSGSPFV GTLKPGTPGP GGHQVAPSKR PGGLGSPIRI GSSGNLSKRT GSGFGGIVVR 180 PRPWPRPKPN CGGDYNGFLA LTCHKCGEQF SKWDAVESHH LSQHAVTQLV EGDSSRNIVE 240 MICRTSWATK SDNTNNCNGM ERILKVHNMQ KTLAEFEEYR ERVKIKASKL AKKHARCLAD 300 GNELLRFHGT TVECNLGAND SSSLCTSEKC NVCRILRRGF AIKKEINGGV GVFTASTSSR 360 ALEAIEESSC ANQGAARKAL IVCRVIAGRV HRPLENVEEL AGQSGFDSLA GKVGIYSNVE 420 ELFLLDPRAL LPCFVVICKA

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MPAAVWFSLK KSLNCRSEVG EVHDPNYRGG RNLGKISTST RKSSTIRSGC SRSIANLKDV  60
VIHGSKRHTE NPQLQSPRSI GSSELLNPIV HEVVLNNSTC ELKITSYPFQ DGNGCGGSSS  120
GGGGSGSPFV GTLKPGTPGP GGHQVAPSKR PGGLGSPIRI GSSGNLSKRT GSGFGGIVVR  180
PRPWPRPKPN CGGDYNGFLA LTCHKCGEQF SKWDAVESHH LSQHAVTQLV EGDSSRNIVE  240
MICRTSWATK SDNTNNCNGM ERILKVHNMQ KTLAEFEEYR ERVKIKASKL AKKHARCLAD  300
GNELLRFHGT TVECNLGAND SSSLCTSEKC NVCRILRRGF AIKKEINGGV GVFTASTSSR  360
ALEAIEESSC ANQGAARKAL IVCRVIAGRV HRPLENVEEL AGQSGFDSLA GKVGIYSNVE  420
ELFLLDPRAL LPCFVVICKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-145	C2H2 family protein