PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171679.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 658aa MW: 73837.9 Da PI: 6.1089

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69	6.5e-22	128	228	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ ++++ + +l+ +d++ +W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_019171679.1 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQQPPWQ--ELVATDLHASQWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 218 99**************************975444444..8********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_019171679.1 219 NGELRVGVRR 228 999***97 PP
2	Auxin_resp	111	1.2e-36	254	336	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++t++ F+v+Y+Pr+s++eFvv+v+++++a ++k+svGmRfkm+fe+e+++err+sGt++gv + +++ WpnSkWr+Lk XP_019171679.1 254 AKHAITTGTFFSVFYKPRTSRAEFVVSVNRYLEAQDHKFSVGMRFKMRFEGEEVPERRFSGTIIGVGENKSCGWPNSKWRNLK 336 689*****************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence
MMAHIAANHF TGGAHPGASN DPLYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST 60 HQGVDQQLPS FDLPDKILCR VLNVRLQAET ETDEVYAQIT LLPETDQSEI TSPDPPLPEP 120 QQYNVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMT QQPPWQELVA TDLHASQWHF 180 RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV 240 ISSHSMHLGV LATAKHAITT GTFFSVFYKP RTSRAEFVVS VNRYLEAQDH KFSVGMRFKM 300 RFEGEEVPER RFSGTIIGVG ENKSCGWPNS KWRNLKVQWD EPSSIYRPDR VSPWDIEPLV 360 ATPPQNPQPP QRNKRARQTV LASNTQEFSA QGMWKPTVDS PSSFSHIDPS RVIDPFLSVK 420 LSSDSKANNN LGYGENDSLP SVSAKSMYWP NQSKTDSTAP VAEKRPANGY RLFGIELLDH 480 STVEDTSPVA APPAVVESHP NPSFDTESDQ NSDPSDPTQS DIDPERSSLR STHESQSKQI 540 RSCTKVHMQG KAVGRAVDLA GFDGYEDLLK KLDEMFEMEG ELCGSVKKWQ VVYTDDEDDM 600 MMVGDDPWHE FCFMVRKIYI YSNEEAKMLS PKIKLPAKDV KPCKPVSDAA PNSTEEQA

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence

MMAHIAANHF TGGAHPGASN DPLYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST  60
HQGVDQQLPS FDLPDKILCR VLNVRLQAET ETDEVYAQIT LLPETDQSEI TSPDPPLPEP  120
QQYNVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMT QQPPWQELVA TDLHASQWHF  180
RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV  240
ISSHSMHLGV LATAKHAITT GTFFSVFYKP RTSRAEFVVS VNRYLEAQDH KFSVGMRFKM  300
RFEGEEVPER RFSGTIIGVG ENKSCGWPNS KWRNLKVQWD EPSSIYRPDR VSPWDIEPLV  360
ATPPQNPQPP QRNKRARQTV LASNTQEFSA QGMWKPTVDS PSSFSHIDPS RVIDPFLSVK  420
LSSDSKANNN LGYGENDSLP SVSAKSMYWP NQSKTDSTAP VAEKRPANGY RLFGIELLDH  480
STVEDTSPVA APPAVVESHP NPSFDTESDQ NSDPSDPTQS DIDPERSSLR STHESQSKQI  540
RSCTKVHMQG KAVGRAVDLA GFDGYEDLLK KLDEMFEMEG ELCGSVKKWQ VVYTDDEDDM  600
MMVGDDPWHE FCFMVRKIYI YSNEEAKMLS PKIKLPAKDV KPCKPVSDAA PNSTEEQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.2	0.0	ARF family protein