PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171560.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 1007aa MW: 113561 Da PI: 5.9026

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	178.9	6.2e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl++ ei++iL n++k+++t e+ +p sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v++l+cyYah+e+n++fqr XP_019171560.1 20 LEAQHRWLRPAEICEILRNYKKFHITPEPLYKPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDMLHCYYAHGEDNENFQR 114 5679***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Le +l +iv+vhylevk XP_019171560.1 115 RSYWMLEPDLMHIVFVHYLEVK 136 *****************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1007 aa Download sequence
MAESGSDPLG FRLDIKQILL EAQHRWLRPA EICEILRNYK KFHITPEPLY KPVSGSVFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEDNE NFQRRSYWML 120 EPDLMHIVFV HYLEVKGNKA MRSIEPTESS SIDESSMSVS SAGNCTKLTS TSADSPSPTS 180 TLTSAYEDVE SEYSHPGTSG LQSFPEIATA GSYSVENVDT VPLQYSAGSQ QILDLASWEK 240 FLENCTKGDI AYKQDPTNSS SVQTNWQHYS EDPALQFHGQ TVHQGFISDS NYDLGRFSNQ 300 KSLQEYFLNT TGPLDMYPNE TAELPIEMNH QYNPNFDSNV QKVGNEEYSV KKHPLLDGSG 360 LKEGLNKVDS FSRWVDKELG DVEELQMHSS NGISWNVIES EDSDSCIPSQ LQLGSDSLNP 420 SLSQEQLFSI IEFSPIWAYS NKETKVLIKG KFLKTEKEVA KCKWSCMFGE VEVPIEVLPT 480 GLLCCYSPPH RAETVPFYIT CSNRLACSEV REFEYRAGPS KDTNAGDSHT MEGLLHERFE 540 RLLHLGATVS HCSSEDIMEK QTIVNKVIEL MEEQNLCMTD FMDLYEPKNR ELPLFGKQLK 600 ERFYTWLLHK INEDGKGPAF VDEEGQGLIH LAAALGYNWA FKPILISGVS IDFRDVNGWT 660 PLHWAAFYGR EETVATLVSL GASPGALTDP SAEFPLGRTP ADLASAYGNK GISGFLAESS 720 LTTHLARLDV SDAKENNALD TSKTKEIQTV TERVAVPTTD NVPDVSLKDS LAAVRNATQA 780 AARIHQIFRV QSFQRKKLIE HNGELLSDEQ ALSMVASKTS RLGQNDRIAH TAATQIQKKF 840 RGWKKRKEFL LIRQRVVRIQ AHVRGHQARK KYKPIIWSVG ILEKVILRWR RKGSGLRGFK 900 SDAVAKPIVM EDTPASAEDD YDFLKEGRKQ TEERMQKALS RVKSMAQYPE AREQYRRMLT 960 ATEGVSKTKD ASTGVVGSSE DTSYQDEDLL DIETLLDDDT FMSIAFE

Sequence ? help Back to Top

Protein Sequence Length: 1007 aa Download sequence

MAESGSDPLG FRLDIKQILL EAQHRWLRPA EICEILRNYK KFHITPEPLY KPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEDNE NFQRRSYWML  120
EPDLMHIVFV HYLEVKGNKA MRSIEPTESS SIDESSMSVS SAGNCTKLTS TSADSPSPTS  180
TLTSAYEDVE SEYSHPGTSG LQSFPEIATA GSYSVENVDT VPLQYSAGSQ QILDLASWEK  240
FLENCTKGDI AYKQDPTNSS SVQTNWQHYS EDPALQFHGQ TVHQGFISDS NYDLGRFSNQ  300
KSLQEYFLNT TGPLDMYPNE TAELPIEMNH QYNPNFDSNV QKVGNEEYSV KKHPLLDGSG  360
LKEGLNKVDS FSRWVDKELG DVEELQMHSS NGISWNVIES EDSDSCIPSQ LQLGSDSLNP  420
SLSQEQLFSI IEFSPIWAYS NKETKVLIKG KFLKTEKEVA KCKWSCMFGE VEVPIEVLPT  480
GLLCCYSPPH RAETVPFYIT CSNRLACSEV REFEYRAGPS KDTNAGDSHT MEGLLHERFE  540
RLLHLGATVS HCSSEDIMEK QTIVNKVIEL MEEQNLCMTD FMDLYEPKNR ELPLFGKQLK  600
ERFYTWLLHK INEDGKGPAF VDEEGQGLIH LAAALGYNWA FKPILISGVS IDFRDVNGWT  660
PLHWAAFYGR EETVATLVSL GASPGALTDP SAEFPLGRTP ADLASAYGNK GISGFLAESS  720
LTTHLARLDV SDAKENNALD TSKTKEIQTV TERVAVPTTD NVPDVSLKDS LAAVRNATQA  780
AARIHQIFRV QSFQRKKLIE HNGELLSDEQ ALSMVASKTS RLGQNDRIAH TAATQIQKKF  840
RGWKKRKEFL LIRQRVVRIQ AHVRGHQARK KYKPIIWSVG ILEKVILRWR RKGSGLRGFK  900
SDAVAKPIVM EDTPASAEDD YDFLKEGRKQ TEERMQKALS RVKSMAQYPE AREQYRRMLT  960
ATEGVSKTKD ASTGVVGSSE DTSYQDEDLL DIETLLDDDT FMSIAFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	844	873	KKRKEFLLIRQRVVRIQAHVRGHQARKKYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	CAMTA family protein