PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171491.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 335aa MW: 36080.4 Da PI: 9.3251

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	7.1e-07	151	177	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk lCrf++ + +Ck+G +C+FaHg+ XP_019171491.1 151 YKKDLCRFWHLYCFCKFGRTCQFAHGF 177 99***********************95 PP
2	zf-CCCH	22.7	1.8e-07	192	217	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk +Cr + tG C yG+ C++ H+ XP_019171491.1 192 YKSQICRSVYTTGSCAYGAMCRYYHP 217 8999*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MENLRGNYNN PKTPTFKLLD GNAVPIHNRF HTPVPLSPVF DPYELSENFN TPNPPSPLVQ 60 RLRSGSSVPF DGGGSRSSGT RGGFGSPLSS IENLLTQPLG SPVTVFKTPV KVEEDVIVMD 120 GFPVNPKGGS GSGSGSSRSR GTGSSDSVQG YKKDLCRFWH LYCFCKFGRT CQFAHGFEEL 180 HPRVRPQVPR NYKSQICRSV YTTGSCAYGA MCRYYHPGQP NPAVQSPAPR AEVAVPVTTP 240 TVVKDPPSAG NSSTSATAST SSASGNTDWS PQDDGIETPL PGKAPEGDVY SHIQRVLYGP 300 SARKRLPIFS DICSEPESES KPKPKPKPKP EPKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	4e-11	C3H family protein