PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171210.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 863aa MW: 96445.2 Da PI: 7.6898

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	9.9e-20	215	304	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA +vGF+ r ++ +ks r+g +++++vC+++ ++++ ++ t+ r+r+++r+gCkak+++k++++g ++v+++e+ H+H+l+ XP_019171210.1 215 FYKQYAGSVGFHCRHHSIRKS-RDGVAVEKHLVCNRQDFKQRVSSVakTTLVTRRRVTNRVGCKAKVVIKLKSNGLYVVHSFEERHTHSLC 304 9***********9999998.8999*********99877664467778999********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 863 aa Download sequence
MNKVDAPTIV VSGSVNVARG AHSYGRSGDV VAHSETSVNF CSETGGGIKG LVILNMSWFL 60 TEMVPNGKEY ESNAQIVSEV RKGLQEAFPQ KMLVCLNSQM CAAVDLESFG ICDKDNSTDV 120 CGEGSGGVCD EGNPTDVGVE CNGDGCDEGN VTDVGVGGSG VSCDEDYLTD VGVQGSPCVL 180 EISPGLTKYW RPVCADNLKP IVGQQFVSLD SAIVFYKQYA GSVGFHCRHH SIRKSRDGVA 240 VEKHLVCNRQ DFKQRVSSVA KTTLVTRRRV TNRVGCKAKV VIKLKSNGLY VVHSFEERHT 300 HSLCSIIARK FLKVNRSLDV GHQMFIASCA QANIGSVRSY RLFKEIVGEY YNVGATGVDF 360 KNFKRDLMAY ILNGDAQLFI DTLFKRRELC EAFDFEYDVD EVDQLSRVFW ADAISRKNFA 420 LFGDVVSFDA TYRTYRYKLV FVPFTGIDNH KRSITFGADL LTREDVDSYV WLLEKFKKTM 480 CHDPICVVTD QDPALKVVVA RVFGTSKHRF CMWHIMCKVG EKVGPVLSKD EVFRRKLNGI 540 VWNKSLDSKS FEDAWSYIME EYGLGDNGWF RYLFESRTFW HPHIFTTSLC QDWLGQRLDQ 600 SLKIVFLTPL ALEKHAMGVY TISVFYDVQV EICAACYSCQ VVSLCDCDGH VSYGIKDGAQ 660 RAWCVELVLS DYTATYSCKM FERMGLLCRH ILFVFKDRGL ESILSRYLVS RWTKGACLKP 720 IFHIDDTIVD QSSKVENVRI FTNLLWSDIY ACVGLADGNI ERLAQLRRVI CEQRQLFLQD 780 GSENGSGVVA GGSKQSVINL FCGAVSQGST VEVRDPIQAK NKGSGKRLKS TREKATSKCV 840 KQSRKCHTCD EYGHNSRTCP LNG

Sequence ? help Back to Top

Protein Sequence Length: 863 aa Download sequence

MNKVDAPTIV VSGSVNVARG AHSYGRSGDV VAHSETSVNF CSETGGGIKG LVILNMSWFL  60
TEMVPNGKEY ESNAQIVSEV RKGLQEAFPQ KMLVCLNSQM CAAVDLESFG ICDKDNSTDV  120
CGEGSGGVCD EGNPTDVGVE CNGDGCDEGN VTDVGVGGSG VSCDEDYLTD VGVQGSPCVL  180
EISPGLTKYW RPVCADNLKP IVGQQFVSLD SAIVFYKQYA GSVGFHCRHH SIRKSRDGVA  240
VEKHLVCNRQ DFKQRVSSVA KTTLVTRRRV TNRVGCKAKV VIKLKSNGLY VVHSFEERHT  300
HSLCSIIARK FLKVNRSLDV GHQMFIASCA QANIGSVRSY RLFKEIVGEY YNVGATGVDF  360
KNFKRDLMAY ILNGDAQLFI DTLFKRRELC EAFDFEYDVD EVDQLSRVFW ADAISRKNFA  420
LFGDVVSFDA TYRTYRYKLV FVPFTGIDNH KRSITFGADL LTREDVDSYV WLLEKFKKTM  480
CHDPICVVTD QDPALKVVVA RVFGTSKHRF CMWHIMCKVG EKVGPVLSKD EVFRRKLNGI  540
VWNKSLDSKS FEDAWSYIME EYGLGDNGWF RYLFESRTFW HPHIFTTSLC QDWLGQRLDQ  600
SLKIVFLTPL ALEKHAMGVY TISVFYDVQV EICAACYSCQ VVSLCDCDGH VSYGIKDGAQ  660
RAWCVELVLS DYTATYSCKM FERMGLLCRH ILFVFKDRGL ESILSRYLVS RWTKGACLKP  720
IFHIDDTIVD QSSKVENVRI FTNLLWSDIY ACVGLADGNI ERLAQLRRVI CEQRQLFLQD  780
GSENGSGVVA GGSKQSVINL FCGAVSQGST VEVRDPIQAK NKGSGKRLKS TREKATSKCV  840
KQSRKCHTCD EYGHNSRTCP LNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-69	FAR1 family protein