PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019171202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26757.2 Da PI: 8.3341 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.3 | 4.8e-09 | 29 | 54 | 15 | 40 |
HHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviif 40 + ++ +lK A+EL+vLCd+e+ + ++ XP_019171202.1 29 RKKAALLKQAKELCVLCDVEIGIAMY 54 45789****************99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MRVGGGIKVG RHLRLMMMSE RERKRVIERK KAALLKQAKE LCVLCDVEIG IAMYEGDCLI 60 DVWPCVEEAR KRFLGFWGLP EAERVKKMVT HEKFVRDWVN GEIEKMRKKE DEVERKEMNV 120 VMKKVIQGES RFEEIQDARQ LMGLYALADE KMQELEKRKQ HLLQLRNHGG AAGVPPLATA 180 ADSASWFVPA MAPLPPATAS WFVPAMAPLP VNGGGGGEGT HRDMIFSDVD FNQVWP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31640.1 | 3e-12 | M-type_MADS family protein |