PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171191.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 1346aa MW: 152874 Da PI: 7.4558

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22.6	1.3e-07	1177	1199	15	37
HHHHHHHHHHHHHHHHHT-EEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevav 37 + ++ +lK A+EL+vLCd+e+ + XP_019171191.1 1177 RKKAALLKQAKELCVLCDVEIGI 1199 45789***************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1346 aa Download sequence
MGGRVDRTVN KGGGPPVFRL NGQNYHLMGS LLPQEGKPPH FAQLYIYDTN NEQINRINAV 60 REGCNQDDIH IDIVNVIQGE LDQNNVLVKS FRMAKSEMDR NPCTEVKIKL LGKRKKDAKT 120 YNLPEVSEVA ALIVGDLDTS IGERDIIVQT KGGQLQRISE LNPSYLPLQY PLLFPYGEDG 180 YREDIAFSNI KGNCGAGGRQ RISPREFFCY RLQSRKEVVS TILHAKRLFQ QFVVDGYTMV 240 ESGRLIYIRT HQKSLRCESY SGLTDALTRG EINPATQGRR IILPSSFTGG ARYMIQNYHD 300 AMAICRWIGY LDLFITFTCN PKWPEVQRFL NDRCLKAEDR PDIICRLFKM KLDSLITDCR 360 KKQLFGSVAG VIYTIEFQKR GLPHAHILLF LDKRNEVSQL GALDKIISAE IPDQNMDVEY 420 YKAVEEFMMH GPCGKARLNS PCMVKGRCSK HFPKNFLECT TFDDDGYPLY RRRENGRTIT 480 KNGIALDNRY VVPHNRHLLL KYKAHINVEW CNQSRSIKYL FKYVNKGHDR VTAEFYKTSN 540 DSDVGKSVDE INMYYDCRYI SPCEAVWRLF GFDIQLRAPS VERLSFHLPN QQSVIFADDD 600 PVDNIVIFRG PTSFSDIKVV NGVQYDSFRD ACYARGLVDD DKEYIDAIEE ASHWASGDKL 660 RRLFVTLLMT SCIGKPEAVW NAVWQHSSED AQYQVRKQLQ NSDSVLNDNQ KMNFALVEIE 720 KLLSIMGKSL KDFPEMPVAD LETYNLISNR LIQEELEYDR VTQEKENNDL VSQLTDEQKV 780 IYEEVLTDIE SKSGGFFFVY GYGGTGKTFL WRALSSALRQ KGEIVLNVAS SGIASLLLPG 840 GRTAHSRFAI PISVNEDSTC NIKQGTPLAE LIMQSKLIIW DEAPMMHKFC FEALDRTMRD 900 LLRSTNPRSC EMTFGGKTVV LGGDFRQILP IIPKGTRQDI VGSSINSSYL WRSCKVFRLT 960 KNLRLRRVKS QIEAKEIEEF ANWIADIGDG KIGNSTDGDA ELTIPDKFLL KCEGDTISTI 1020 VDSIFPLFRS ANGDLSYLED SAILAPTLDM VDIINQYMND QNPSEARTYL SCDSVCKSDS 1080 NANMLAELHT PEFLNGLRCS GVPNHALTLK IGSPVMLLRN IDHTLGLCNG TRLIVTRSEV 1140 LSSMKQLSMR VGGGIKVGRH LRLMMMSERE RKRVIERKKA ALLKQAKELC VLCDVEIGIA 1200 MHEGDCLIDV WPCVEEARKR FLGFWGLPEA ERVKKMMRKK EHEVERKEMN VVMKKVIQGE 1260 SRLEEIKDAR QLMGLYALAD EKMQELEKTK QHLLQQRSVP PPPATASWFV PAMAPPPANG 1320 GGGGEGTHHD MIFSDADFNQ VWPYNF

Sequence ? help Back to Top

Protein Sequence Length: 1346 aa Download sequence

MGGRVDRTVN KGGGPPVFRL NGQNYHLMGS LLPQEGKPPH FAQLYIYDTN NEQINRINAV  60
REGCNQDDIH IDIVNVIQGE LDQNNVLVKS FRMAKSEMDR NPCTEVKIKL LGKRKKDAKT  120
YNLPEVSEVA ALIVGDLDTS IGERDIIVQT KGGQLQRISE LNPSYLPLQY PLLFPYGEDG  180
YREDIAFSNI KGNCGAGGRQ RISPREFFCY RLQSRKEVVS TILHAKRLFQ QFVVDGYTMV  240
ESGRLIYIRT HQKSLRCESY SGLTDALTRG EINPATQGRR IILPSSFTGG ARYMIQNYHD  300
AMAICRWIGY LDLFITFTCN PKWPEVQRFL NDRCLKAEDR PDIICRLFKM KLDSLITDCR  360
KKQLFGSVAG VIYTIEFQKR GLPHAHILLF LDKRNEVSQL GALDKIISAE IPDQNMDVEY  420
YKAVEEFMMH GPCGKARLNS PCMVKGRCSK HFPKNFLECT TFDDDGYPLY RRRENGRTIT  480
KNGIALDNRY VVPHNRHLLL KYKAHINVEW CNQSRSIKYL FKYVNKGHDR VTAEFYKTSN  540
DSDVGKSVDE INMYYDCRYI SPCEAVWRLF GFDIQLRAPS VERLSFHLPN QQSVIFADDD  600
PVDNIVIFRG PTSFSDIKVV NGVQYDSFRD ACYARGLVDD DKEYIDAIEE ASHWASGDKL  660
RRLFVTLLMT SCIGKPEAVW NAVWQHSSED AQYQVRKQLQ NSDSVLNDNQ KMNFALVEIE  720
KLLSIMGKSL KDFPEMPVAD LETYNLISNR LIQEELEYDR VTQEKENNDL VSQLTDEQKV  780
IYEEVLTDIE SKSGGFFFVY GYGGTGKTFL WRALSSALRQ KGEIVLNVAS SGIASLLLPG  840
GRTAHSRFAI PISVNEDSTC NIKQGTPLAE LIMQSKLIIW DEAPMMHKFC FEALDRTMRD  900
LLRSTNPRSC EMTFGGKTVV LGGDFRQILP IIPKGTRQDI VGSSINSSYL WRSCKVFRLT  960
KNLRLRRVKS QIEAKEIEEF ANWIADIGDG KIGNSTDGDA ELTIPDKFLL KCEGDTISTI  1020
VDSIFPLFRS ANGDLSYLED SAILAPTLDM VDIINQYMND QNPSEARTYL SCDSVCKSDS  1080
NANMLAELHT PEFLNGLRCS GVPNHALTLK IGSPVMLLRN IDHTLGLCNG TRLIVTRSEV  1140
LSSMKQLSMR VGGGIKVGRH LRLMMMSERE RKRVIERKKA ALLKQAKELC VLCDVEIGIA  1200
MHEGDCLIDV WPCVEEARKR FLGFWGLPEA ERVKKMMRKK EHEVERKEMN VVMKKVIQGE  1260
SRLEEIKDAR QLMGLYALAD EKMQELEKTK QHLLQQRSVP PPPATASWFV PAMAPPPANG  1320
GGGGEGTHHD MIFSDADFNQ VWPYNF