PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170925.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 584aa MW: 64239.9 Da PI: 6.2033

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.1	2e-28	172	225	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+gL++e+v+SHLQkYRl XP_019170925.1 172 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILELMNVEGLSRENVASHLQKYRL 225 79*****************.******************************8 PP
2	Myb_DNA-binding	37.3	6.3e-12	174	224	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++v av+qlG + +k+I + m+ +g++++++ s++qky+ XP_019170925.1 174 RVVWSIELHRKFVAAVNQLGIEkaVPKRILELMNvEGLSRENVASHLQKYR 224 678***********************************************7 PP
3	Response_reg	62.7	1.9e-21	21	110	21	109
TTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 21 egyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 +g+ v+++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++ +++ + + Ga d+l+Kp+ +eel++ XP_019170925.1 21 SGFFAVTTTSQARMALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTKLVMKGVTHGACDYLVKPVRIEELRN 110 56669************888889***************87754.558**********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MPVSWNHMLF WLDVCCHVFT SGFFAVTTTS QARMALKMLR ENKDRFDLVI SDVHMPDMDG 60 FKLLELVGLE MDLPVIMLSA NSDTKLVMKG VTHGACDYLV KPVRIEELRN IWQHVIRKSK 120 GQNKFDDQDN GYRGGQGFPL TGSGEQNALL NKKRKDEEDE TNENEDPSTQ KKPRVVWSIE 180 LHRKFVAAVN QLGIEKAVPK RILELMNVEG LSRENVASHL QKYRLYLKRI SSVATQQANM 240 VAALRGKDSA FMRMASLDGL GDFQSLGGPG RFNHTTLSTY TPADMLGRLS SATGISIRNL 300 SAHNHAQNLE NSLGSDGNLN PNISLSSHNA ASLFQGIPSP LAVQELNPLE NSRALTAFSD 360 SGSVIGSSTN PIMLQGSPKQ ELIGGGFGNQ HSLNMASLSS ELYNTGVNSS SNFLGHGRCS 420 ENWQASIQVS EFQSGSYPLT ETFSHSQLPQ NCEREHDLHS SPVACTTFED SREAQVPRQQ 480 NQNSNDIFRN LSSHVPGNGM TPSLSQGSLV LFHQNGNEMA TPNPRTRSNE DNLLESTKTH 540 GAFVSQGFDA LDDLMNAVIK QEEDNRGTLD GEFGFGAYPF GSCI

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MPVSWNHMLF WLDVCCHVFT SGFFAVTTTS QARMALKMLR ENKDRFDLVI SDVHMPDMDG  60
FKLLELVGLE MDLPVIMLSA NSDTKLVMKG VTHGACDYLV KPVRIEELRN IWQHVIRKSK  120
GQNKFDDQDN GYRGGQGFPL TGSGEQNALL NKKRKDEEDE TNENEDPSTQ KKPRVVWSIE  180
LHRKFVAAVN QLGIEKAVPK RILELMNVEG LSRENVASHL QKYRLYLKRI SSVATQQANM  240
VAALRGKDSA FMRMASLDGL GDFQSLGGPG RFNHTTLSTY TPADMLGRLS SATGISIRNL  300
SAHNHAQNLE NSLGSDGNLN PNISLSSHNA ASLFQGIPSP LAVQELNPLE NSRALTAFSD  360
SGSVIGSSTN PIMLQGSPKQ ELIGGGFGNQ HSLNMASLSS ELYNTGVNSS SNFLGHGRCS  420
ENWQASIQVS EFQSGSYPLT ETFSHSQLPQ NCEREHDLHS SPVACTTFED SREAQVPRQQ  480
NQNSNDIFRN LSSHVPGNGM TPSLSQGSLV LFHQNGNEMA TPNPRTRSNE DNLLESTKTH  540
GAFVSQGFDA LDDLMNAVIK QEEDNRGTLD GEFGFGAYPF GSCI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-101	ARR-B family protein