PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170923.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 600aa MW: 66239.1 Da PI: 6.2075

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90	2.1e-28	196	249	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+gL++e+v+SHLQkYRl XP_019170923.1 196 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILELMNVEGLSRENVASHLQKYRL 249 79*****************.******************************8 PP
2	Myb_DNA-binding	37.2	6.6e-12	198	248	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++v av+qlG + +k+I + m+ +g++++++ s++qky+ XP_019170923.1 198 RVVWSIELHRKFVAAVNQLGIEkaVPKRILELMNvEGLSRENVASHLQKYR 248 678***********************************************7 PP
3	Response_reg	79.8	9.3e-27	26	134	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ ++ll+ +l+k +y +v+++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++ +++ + + G XP_019170923.1 26 VLAVDDDPICLKLLEGLLRKCQY-HVTTTSQARMALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTKLVMKGVTHG 118 799******************.***********888889***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l+Kp+ +eel++ XP_019170923.1 119 ACDYLVKPVRIEELRN 134 ************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MTVEETRRNM GVDRENYHNF PVGMRVLAVD DDPICLKLLE GLLRKCQYHV TTTSQARMAL 60 KMLRENKDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDTKL VMKGVTHGAC 120 DYLVKPVRIE ELRNIWQHVI RKSKGQNKFD DQDNGYRGGQ GFPLTGSGEQ NALLNKKRKD 180 EEDETNENED PSTQKKPRVV WSIELHRKFV AAVNQLGIEK AVPKRILELM NVEGLSRENV 240 ASHLQKYRLY LKRISSVATQ QANMVAALRG KDSAFMRMAS LDGLGDFQSL GGPGRFNHTT 300 LSTYTPADML GRLSSATGIS IRNLSAHNHA QNLENSLGSD GNLNPNISLS SHNAASLFQG 360 IPSPLAVQEL NPLENSRALT AFSDSGSVIG SSTNPIMLQG SPKQELIGGG FGNQHSLNMA 420 SLSSELYNTG VNSSSNFLGH GRCSENWQAS IQVSEFQSGS YPLTETFSHS QLPQNCEREH 480 DLHSSPVACT TFEDSREAQV PRQQNQNSND IFRNLSSHVP GNGSLVLFHQ NGNEMATPNP 540 RTRSNEDNLL ESTKTHGAFV SQGFDALDDL MNAVIKQEED NRGTLDGEFG FGAYPFGSCI

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MTVEETRRNM GVDRENYHNF PVGMRVLAVD DDPICLKLLE GLLRKCQYHV TTTSQARMAL  60
KMLRENKDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDTKL VMKGVTHGAC  120
DYLVKPVRIE ELRNIWQHVI RKSKGQNKFD DQDNGYRGGQ GFPLTGSGEQ NALLNKKRKD  180
EEDETNENED PSTQKKPRVV WSIELHRKFV AAVNQLGIEK AVPKRILELM NVEGLSRENV  240
ASHLQKYRLY LKRISSVATQ QANMVAALRG KDSAFMRMAS LDGLGDFQSL GGPGRFNHTT  300
LSTYTPADML GRLSSATGIS IRNLSAHNHA QNLENSLGSD GNLNPNISLS SHNAASLFQG  360
IPSPLAVQEL NPLENSRALT AFSDSGSVIG SSTNPIMLQG SPKQELIGGG FGNQHSLNMA  420
SLSSELYNTG VNSSSNFLGH GRCSENWQAS IQVSEFQSGS YPLTETFSHS QLPQNCEREH  480
DLHSSPVACT TFEDSREAQV PRQQNQNSND IFRNLSSHVP GNGSLVLFHQ NGNEMATPNP  540
RTRSNEDNLL ESTKTHGAFV SQGFDALDDL MNAVIKQEED NRGTLDGEFG FGAYPFGSCI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-123	ARR-B family protein