PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170672.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 412aa MW: 46698.1 Da PI: 6.615

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.6	1.8e-07	349	381	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + XP_019170672.1 349 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 381 59*****************************87 PP
2	ELK	27.8	5.6e-10	302	323	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh L+++Y++++ ++++E++ XP_019170672.1 302 ELKHDLKQGYKEKIADIREEIM 323 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MCFKKQKQLT NVVYGGVESR RWWWCIMFED QFSEEMGVEQ QQNAGVLRSM LPDQPSPSPK 60 SPPPSTSVFL RLQRHHHFSD SPNNNSNFLH LQTSNNNNSD SSTNWLSPTA DVKKHGEGEF 120 EGAGGSSSSS SWVREKCKAD LLNHPLYDQL LSAHVSCLRI ATPVDQLPRI DAQLAQSQNV 180 VANYSSLLAH PQPPLDDKDL DQFMTHYVML LSSFKEQLQQ HVRVHAMEAV MACWELEQSL 240 QSLTGVAPGE GTGATMSDDE DDLQADSDTN NLFFDGGADT MGFGPLVPTE TERSLMERVR 300 QELKHDLKQG YKEKIADIRE EIMRKRRAGK LPGDTTSLLK AWWQSHSKWP YPTEEDKARL 360 VQETGLQLKQ INNWFINQRK RNWHTNPSSS SSSSHKTKRK SAAEKSSTEH FM

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MCFKKQKQLT NVVYGGVESR RWWWCIMFED QFSEEMGVEQ QQNAGVLRSM LPDQPSPSPK  60
SPPPSTSVFL RLQRHHHFSD SPNNNSNFLH LQTSNNNNSD SSTNWLSPTA DVKKHGEGEF  120
EGAGGSSSSS SWVREKCKAD LLNHPLYDQL LSAHVSCLRI ATPVDQLPRI DAQLAQSQNV  180
VANYSSLLAH PQPPLDDKDL DQFMTHYVML LSSFKEQLQQ HVRVHAMEAV MACWELEQSL  240
QSLTGVAPGE GTGATMSDDE DDLQADSDTN NLFFDGGADT MGFGPLVPTE TERSLMERVR  300
QELKHDLKQG YKEKIADIRE EIMRKRRAGK LPGDTTSLLK AWWQSHSKWP YPTEEDKARL  360
VQETGLQLKQ INNWFINQRK RNWHTNPSSS SSSSHKTKRK SAAEKSSTEH FM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-145	TALE family protein