PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170524.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 359aa MW: 40922.6 Da PI: 6.6193

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	122.4	2.1e-38	129	205	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+dls+ k yh+rh+vC hsk+++++++g+eqrfCqqCsrfh l efD++krsCr+rLa hn+rrrk++ XP_019170524.1 129 ICQVDGCEMDLSSSKYYHQRHRVCVDHSKTTKTILHGVEQRFCQQCSRFHLLAEFDDDKRSCRKRLACHNKRRRKPR 205 5**************************************************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEPWSHGLDN EGSLLFSEYG VEVNTFSDFD KNMIIAPSFE EINEGADFME LWTNNNSNTD 60 NNFTINNGNF TSKMMMFSDD DMNGNNWKRI PAIECYNGYG GLESSGQSAS AKKEKMMVEY 120 YNSCQVPIIC QVDGCEMDLS SSKYYHQRHR VCVDHSKTTK TILHGVEQRF CQQCSRFHLL 180 AEFDDDKRSC RKRLACHNKR RRKPRLYTHW DASLLLEMAS QGASPFLIPE TLPGNLSFCQ 240 EQENKTSKDW HSMLSFYDAL PAAGNLVEML SPVHQELSGG ENSGSAFSHL SATQTRADHR 300 PDSKKSNNSM NYSKKCLKSS PRSGPIIDLQ QLSTHFRRVE QQRSSVQGKN QEIDHVVQF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEPWSHGLDN EGSLLFSEYG VEVNTFSDFD KNMIIAPSFE EINEGADFME LWTNNNSNTD  60
NNFTINNGNF TSKMMMFSDD DMNGNNWKRI PAIECYNGYG GLESSGQSAS AKKEKMMVEY  120
YNSCQVPIIC QVDGCEMDLS SSKYYHQRHR VCVDHSKTTK TILHGVEQRF CQQCSRFHLL  180
AEFDDDKRSC RKRLACHNKR RRKPRLYTHW DASLLLEMAS QGASPFLIPE TLPGNLSFCQ  240
EQENKTSKDW HSMLSFYDAL PAAGNLVEML SPVHQELSGG ENSGSAFSHL SATQTRADHR  300
PDSKKSNNSM NYSKKCLKSS PRSGPIIDLQ QLSTHFRRVE QQRSSVQGKN QEIDHVVQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	204	KRSCRKRLACHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-38	SBP family protein