PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170523.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 349aa MW: 39333.6 Da PI: 7.3645

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	119.8	1.3e-37	121	196	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gC+ dl + k+yhr+hkvC hs a++v+v+g eqrfCqqCsrfh + efD++krsCr+rL +hnerrrk+ XP_019170523.1 121 VCQVDGCKRDLRSSKHYHRKHKVCPEHSIAAQVVVNGAEQRFCQQCSRFHIMAEFDDKKRSCRKRLTQHNERRRKP 196 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MESSWSNGLE RGFWVSDNGF EFPVETLKRT TNPQSERNLI PFCEGELLMV DMMWNSLVSS 60 SSADRDDDDD GAIKMLSSES SLPSKRPRTT NHEETKGRGQ SSPTHTQDSS VMNFSCSQVP 120 VCQVDGCKRD LRSSKHYHRK HKVCPEHSIA AQVVVNGAEQ RFCQQCSRFH IMAEFDDKKR 180 SCRKRLTQHN ERRRKPLNQI HWGAAARFLD VASQRLPMPF HFPAQLSQTY FCHDIYGKNS 240 SCQMESTVLQ QSNAHTNANQ HDPQKQASME ETSSAAGRKS KHALYLLSAE PTGGNLPAIT 300 SNSLTFHGCN GADQPEGNYQ ESGSVLDLQQ LSALFQRVQQ QQQQEFASF

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MESSWSNGLE RGFWVSDNGF EFPVETLKRT TNPQSERNLI PFCEGELLMV DMMWNSLVSS  60
SSADRDDDDD GAIKMLSSES SLPSKRPRTT NHEETKGRGQ SSPTHTQDSS VMNFSCSQVP  120
VCQVDGCKRD LRSSKHYHRK HKVCPEHSIA AQVVVNGAEQ RFCQQCSRFH IMAEFDDKKR  180
SCRKRLTQHN ERRRKPLNQI HWGAAARFLD VASQRLPMPF HFPAQLSQTY FCHDIYGKNS  240
SCQMESTVLQ QSNAHTNANQ HDPQKQASME ETSSAAGRKS KHALYLLSAE PTGGNLPAIT  300
SNSLTFHGCN GADQPEGNYQ ESGSVLDLQQ LSALFQRVQQ QQQQEFASF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	30	ETLKRT
2	178	195	KKRSCRKRLTQHNERRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-38	SBP family protein