PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170329.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 406aa    MW: 43494.4 Da    PI: 7.3968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.78.6e-3281185199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_019170329.1  81 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSNNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGaGEtVK 175
                     89****************************77788999*************************************************66566677 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_019170329.1 176 DRLFIDWRRR 185
                     8888888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MRPFSVASSS LSYGRQQQRV WLDGGGEGEG GGGEAAGVMM MMMEGGGGGG GEVNGGEGGG  60
GGGGDEAASS SGVLMEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD SSNNEKGLLL  120
NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKKLDA GDIVSFQRGA GETVKDRLFI  180
DWRRRPDSHS DHHHRHHHLA PIPAISLPHH LPFQRSILHY PSAAAPPWNH HHHHHQAVLS  240
PPPPPYGYTY GFGSTHHNSV IFNGGGGGGA SGSAVVVNGN PCSSGIYLRP MSAAHQQEIM  300
QRRGGGAMVF ESVPVVQGKA AAKRLRLFGV NMDCPISDSD DCDILSSSSS AATATASNSA  360
ASPTTIPTSL QLRPCGYDTT QELLELAASD KPNKSSSSSM SLDFDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.13e-62B3 family protein