PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170305.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 377aa MW: 40593.9 Da PI: 7.4212

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.6	3.1e-36	48	185	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWLl++a p i el+++++ + ++++ + s++ + +g XP_019170305.1 48 SGGKDRHSKVWTSKGLRDRRVRLSVNTAVQFYDLQDRLGYDQPSKAVEWLLKAAAPFIEELPSLKALFP---DTDTLQLSDERKLNGggveaapp 139 689***********************************************************33333...22333333332222234556677 PP TCP 89 .kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 + + s+++ ++ + +++ l+l++ esr ar+rar r +ek + k XP_019170305.1 140 pQ-QHSSPSDTSKGSAPSAGLSLSRsESRILARERARGRAAEKEKGK 185 43.33333344444444456888888**********999998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MEVENPRIGN GGEEDGEIKR SNGGGGGGGL GRLCGWPSSR IVRVSRASGG KDRHSKVWTS 60 KGLRDRRVRL SVNTAVQFYD LQDRLGYDQP SKAVEWLLKA AAPFIEELPS LKALFPDTDT 120 LQLSDERKLN GGGVEAAPPP QQHSSPSDTS KGSAPSAGLS LSRSESRILA RERARGRAAE 180 KEKGKDDIAP AGANLISQNS SFTELLTNGK DESNFFSLDY VTTGGLATAQ PSSPDFPPQV 240 HLGNPLHLPP PPPPPVFTIP GDHHPELQNF SFVTDHRHHH HGNHNEYNLN FSISSPSSHS 300 GLAAFRGTLQ SNSPSSPSLL PHLQRFPAAV DLTPASFFTA AAPTAPVDNH HHFLGFDARL 360 QLFYGDHHAD HNGKGKT

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MEVENPRIGN GGEEDGEIKR SNGGGGGGGL GRLCGWPSSR IVRVSRASGG KDRHSKVWTS  60
KGLRDRRVRL SVNTAVQFYD LQDRLGYDQP SKAVEWLLKA AAPFIEELPS LKALFPDTDT  120
LQLSDERKLN GGGVEAAPPP QQHSSPSDTS KGSAPSAGLS LSRSESRILA RERARGRAAE  180
KEKGKDDIAP AGANLISQNS SFTELLTNGK DESNFFSLDY VTTGGLATAQ PSSPDFPPQV  240
HLGNPLHLPP PPPPPVFTIP GDHHPELQNF SFVTDHRHHH HGNHNEYNLN FSISSPSSHS  300
GLAAFRGTLQ SNSPSSPSLL PHLQRFPAAV DLTPASFFTA AAPTAPVDNH HHFLGFDARL  360
QLFYGDHHAD HNGKGKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	4e-41	TCP family protein