PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170136.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-PHD

Protein Properties

Length: 995aa MW: 110606 Da PI: 4.4444

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.2	6.7e-14	844	891	5	52
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +f ++ +++L+e+F++n+yp+++ +e LA++lgLt rqV WF N R XP_019170136.1 844 SRFGEDAIKRLNEAFKENHYPKRNVKESLARELGLTLRQVDKWFGNSR 891 578999****************************************99 PP
2	PHD	39	1.8e-13	524	579	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l +e++p g wlC+ C++k XP_019170136.1 524 FCAKCGStdLPADNDIILCDGaCERGFHQLCLEPPLLKEDIPPGdeGWLCPGCDCK 579 699**66566****66****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence
MTETVHSGTG ESNVKCYDPE SVERLTLSDT IPKNSNCESL GENAIEFEYQ NRDSEPLGQT 60 MAIRNGNVES KPAETRVAEF ELVGELSPNY ISVDSNKEEK RPEFKDCREN SKTEQIKFPF 120 GNEATSSKVE YSAEPLQVMP AKYVSMDSNN EQKIPSLQDC GQNSKIEDNV GTSSTIESAI 180 EPPKELPTEN IFTDSNLEQK NLPLKNCGFH SNLVMALPSE NKDNNFPVQY PAEPPNDVIK 240 NHDFEQLNET QKDAVEIPSE PLVQKSENDE NLGERTIVES VCNEVLLPSG DVAVNSSLEQ 300 KESAPEDLTV DSSFKNLELL HENEEAISIV DRLAELHGDA SENPGQDLSK MPRDSNENAT 360 QLECGDKRPT GCSRKRKATL GSPVISTRVL RSRTQEEPKP VEPIHASAND SATDEKKRKR 420 RKRKHSKQIA VNEFSGIKSH LRYLLSRIKY EQNLIDAYSA EGWKGQSLEK LKPEKELQRA 480 KSGIFHYKLK IRDLFQRIDT SLSQGKLPES LFDSEGQIDS EDIFCAKCGS TDLPADNDII 540 LCDGACERGF HQLCLEPPLL KEDIPPGDEG WLCPGCDCKV DCTDLLSDLL GTDLSVTDSW 600 EKVFPEEAAA AASGKQLDDI SGLPSDGSDD DDYNPDNPEV EENVSQDESS SDENDSSDAS 660 FDLETTANDD ILLGLPSEDS EDDDFDPDAP DHDEQVMQES SSSGFTSDSE DSGQDQCEKI 720 KVGGAKQQPL KDEVSYLLHS STVLASGKRQ VERLDYKKLH DETYGIASSD SSDEDYEDNS 780 PPKRRKKGSD KAGLKSSDQS PLDAMDKNFK QNEIEHTANR RASKKFNGEG LVVSESGSSG 840 KRNSRFGEDA IKRLNEAFKE NHYPKRNVKE SLARELGLTL RQVDKWFGNS RWSFYHPSAS 900 RKEPIASETP PKSGISLPQM EEATPDVQEC LNGDMKLLQP ETKETDVLKH TTPESKTTSN 960 ADDQASNQSS KTQRSKKRNT QVDIANSQRA RRSNR

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence

MTETVHSGTG ESNVKCYDPE SVERLTLSDT IPKNSNCESL GENAIEFEYQ NRDSEPLGQT  60
MAIRNGNVES KPAETRVAEF ELVGELSPNY ISVDSNKEEK RPEFKDCREN SKTEQIKFPF  120
GNEATSSKVE YSAEPLQVMP AKYVSMDSNN EQKIPSLQDC GQNSKIEDNV GTSSTIESAI  180
EPPKELPTEN IFTDSNLEQK NLPLKNCGFH SNLVMALPSE NKDNNFPVQY PAEPPNDVIK  240
NHDFEQLNET QKDAVEIPSE PLVQKSENDE NLGERTIVES VCNEVLLPSG DVAVNSSLEQ  300
KESAPEDLTV DSSFKNLELL HENEEAISIV DRLAELHGDA SENPGQDLSK MPRDSNENAT  360
QLECGDKRPT GCSRKRKATL GSPVISTRVL RSRTQEEPKP VEPIHASAND SATDEKKRKR  420
RKRKHSKQIA VNEFSGIKSH LRYLLSRIKY EQNLIDAYSA EGWKGQSLEK LKPEKELQRA  480
KSGIFHYKLK IRDLFQRIDT SLSQGKLPES LFDSEGQIDS EDIFCAKCGS TDLPADNDII  540
LCDGACERGF HQLCLEPPLL KEDIPPGDEG WLCPGCDCKV DCTDLLSDLL GTDLSVTDSW  600
EKVFPEEAAA AASGKQLDDI SGLPSDGSDD DDYNPDNPEV EENVSQDESS SDENDSSDAS  660
FDLETTANDD ILLGLPSEDS EDDDFDPDAP DHDEQVMQES SSSGFTSDSE DSGQDQCEKI  720
KVGGAKQQPL KDEVSYLLHS STVLASGKRQ VERLDYKKLH DETYGIASSD SSDEDYEDNS  780
PPKRRKKGSD KAGLKSSDQS PLDAMDKNFK QNEIEHTANR RASKKFNGEG LVVSESGSSG  840
KRNSRFGEDA IKRLNEAFKE NHYPKRNVKE SLARELGLTL RQVDKWFGNS RWSFYHPSAS  900
RKEPIASETP PKSGISLPQM EEATPDVQEC LNGDMKLLQP ETKETDVLKH TTPESKTTSN  960
ADDQASNQSS KTQRSKKRNT QVDIANSQRA RRSNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	416	421	KKRKRR
2	416	422	KKRKRRK
3	416	423	KKRKRRKR
4	416	424	KKRKRRKRK
5	417	423	KKRKRRK
6	417	422	KRKRRK
7	418	424	KKRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-77	HB-PHD family protein