PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170135.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-PHD

Protein Properties

Length: 1072aa MW: 118872 Da PI: 4.3299

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.1	7.3e-14	921	968	5	52
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +f ++ +++L+e+F++n+yp+++ +e LA++lgLt rqV WF N R XP_019170135.1 921 SRFGEDAIKRLNEAFKENHYPKRNVKESLARELGLTLRQVDKWFGNSR 968 578999****************************************99 PP
2	PHD	38.9	2e-13	524	579	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l +e++p g wlC+ C++k XP_019170135.1 524 FCAKCGStdLPADNDIILCDGaCERGFHQLCLEPPLLKEDIPPGdeGWLCPGCDCK 579 699**66566****66****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence
MTETVHSGTG ESNVKCYDPE SVERLTLSDT IPKNSNCESL GENAIEFEYQ NRDSEPLGQT 60 MAIRNGNVES KPAETRVAEF ELVGELSPNY ISVDSNKEEK RPEFKDCREN SKTEQIKFPF 120 GNEATSSKVE YSAEPLQVMP AKYVSMDSNN EQKIPSLQDC GQNSKIEDNV GTSSTIESAI 180 EPPKELPTEN IFTDSNLEQK NLPLKNCGFH SNLVMALPSE NKDNNFPVQY PAEPPNDVIK 240 NHDFEQLNET QKDAVEIPSE PLVQKSENDE NLGERTIVES VCNEVLLPSG DVAVNSSLEQ 300 KESAPEDLTV DSSFKNLELL HENEEAISIV DRLAELHGDA SENPGQDLSK MPRDSNENAT 360 QLECGDKRPT GCSRKRKATL GSPVISTRVL RSRTQEEPKP VEPIHASAND SATDEKKRKR 420 RKRKHSKQIA VNEFSGIKSH LRYLLSRIKY EQNLIDAYSA EGWKGQSLEK LKPEKELQRA 480 KSGIFHYKLK IRDLFQRIDT SLSQGKLPES LFDSEGQIDS EDIFCAKCGS TDLPADNDII 540 LCDGACERGF HQLCLEPPLL KEDIPPGDEG WLCPGCDCKV DCTDLLSDLL GTDLSVTDSW 600 EKVFPEEAAA AASGKQLDDI SGLPSDGSDD DDYNPDNPEV EENVSQDESS SDENDSSDAS 660 FDLETTANDG ILLGLPSEDS EDEDFDPDAP DHDEQVMQDS SSSDFSSDSE DFGVVFENNT 720 SPGQDQCEKI KVGGAKQQSL ETTANDDILL GLPSEDSEDD DFDPDAPDHD EQVMQESSSS 780 GFTSDSEDSG QDQCEKIKVG GAKQQPLKDE VSYLLHSSTV LASGKRQVER LDYKKLHDET 840 YGIASSDSSD EDYEDNSPPK RRKKGSDKAG LKSSDQSPLD AMDKNFKQNE IEHTANRRAS 900 KKFNGEGLVV SESGSSGKRN SRFGEDAIKR LNEAFKENHY PKRNVKESLA RELGLTLRQV 960 DKWFGNSRWS FYHPSASRKE PIASETPPKS GISLPQMEEA TPDVQECLNG DMKLLQPETK 1020 ETDVLKHTTP ESKTTSNADD QASNQSSKTQ RSKKRNTQVD IANSQRARRS NR

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence

MTETVHSGTG ESNVKCYDPE SVERLTLSDT IPKNSNCESL GENAIEFEYQ NRDSEPLGQT  60
MAIRNGNVES KPAETRVAEF ELVGELSPNY ISVDSNKEEK RPEFKDCREN SKTEQIKFPF  120
GNEATSSKVE YSAEPLQVMP AKYVSMDSNN EQKIPSLQDC GQNSKIEDNV GTSSTIESAI  180
EPPKELPTEN IFTDSNLEQK NLPLKNCGFH SNLVMALPSE NKDNNFPVQY PAEPPNDVIK  240
NHDFEQLNET QKDAVEIPSE PLVQKSENDE NLGERTIVES VCNEVLLPSG DVAVNSSLEQ  300
KESAPEDLTV DSSFKNLELL HENEEAISIV DRLAELHGDA SENPGQDLSK MPRDSNENAT  360
QLECGDKRPT GCSRKRKATL GSPVISTRVL RSRTQEEPKP VEPIHASAND SATDEKKRKR  420
RKRKHSKQIA VNEFSGIKSH LRYLLSRIKY EQNLIDAYSA EGWKGQSLEK LKPEKELQRA  480
KSGIFHYKLK IRDLFQRIDT SLSQGKLPES LFDSEGQIDS EDIFCAKCGS TDLPADNDII  540
LCDGACERGF HQLCLEPPLL KEDIPPGDEG WLCPGCDCKV DCTDLLSDLL GTDLSVTDSW  600
EKVFPEEAAA AASGKQLDDI SGLPSDGSDD DDYNPDNPEV EENVSQDESS SDENDSSDAS  660
FDLETTANDG ILLGLPSEDS EDEDFDPDAP DHDEQVMQDS SSSDFSSDSE DFGVVFENNT  720
SPGQDQCEKI KVGGAKQQSL ETTANDDILL GLPSEDSEDD DFDPDAPDHD EQVMQESSSS  780
GFTSDSEDSG QDQCEKIKVG GAKQQPLKDE VSYLLHSSTV LASGKRQVER LDYKKLHDET  840
YGIASSDSSD EDYEDNSPPK RRKKGSDKAG LKSSDQSPLD AMDKNFKQNE IEHTANRRAS  900
KKFNGEGLVV SESGSSGKRN SRFGEDAIKR LNEAFKENHY PKRNVKESLA RELGLTLRQV  960
DKWFGNSRWS FYHPSASRKE PIASETPPKS GISLPQMEEA TPDVQECLNG DMKLLQPETK  1020
ETDVLKHTTP ESKTTSNADD QASNQSSKTQ RSKKRNTQVD IANSQRARRS NR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	416	421	KKRKRR
2	416	422	KKRKRRK
3	416	423	KKRKRRKR
4	416	424	KKRKRRKRK
5	417	423	KKRKRRK
6	417	422	KRKRRK
7	418	424	KKRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-77	HB-PHD family protein